Circovirus-like genome DCCV-9

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; unclassified Circoviridae

Average proteome isoelectric point is 7.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A190WHL0|A0A190WHL0_9CIRC Uncharacterized protein OS=Circovirus-like genome DCCV-9 OX=1788449 PE=4 SV=1
MM1 pKa = 7.47MFRR4 pKa = 11.84ILSGLMATADD14 pKa = 3.59KK15 pKa = 10.52KK16 pKa = 10.64RR17 pKa = 11.84CFSIMSRR24 pKa = 11.84TATVLSMLIFFVRR37 pKa = 11.84SIVILFKK44 pKa = 11.12SPSKK48 pKa = 10.46EE49 pKa = 3.85DD50 pKa = 3.41SSLGTQSGSTLPPLDD65 pKa = 4.23SLPDD69 pKa = 3.66AGLILEE75 pKa = 4.28TLARR79 pKa = 11.84STEE82 pKa = 3.94EE83 pKa = 4.6LIAILDD89 pKa = 3.87QEE91 pKa = 4.86STCSSITHH99 pKa = 6.15TT100 pKa = 4.41

Molecular weight: 10.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A190WHL0|A0A190WHL0_9CIRC Uncharacterized protein OS=Circovirus-like genome DCCV-9 OX=1788449 PE=4 SV=1
MM1 pKa = 6.1VTKK4 pKa = 10.37SAYY7 pKa = 8.71IKK9 pKa = 10.51KK10 pKa = 10.25GSRR13 pKa = 11.84LAKK16 pKa = 10.25ARR18 pKa = 11.84ARR20 pKa = 11.84PYY22 pKa = 10.54KK23 pKa = 9.98KK24 pKa = 10.43SKK26 pKa = 10.15ASKK29 pKa = 8.99TFAKK33 pKa = 10.01KK34 pKa = 10.11VKK36 pKa = 9.38AVVMKK41 pKa = 10.02TVEE44 pKa = 4.41TKK46 pKa = 10.36SRR48 pKa = 11.84PWGYY52 pKa = 11.36GKK54 pKa = 10.87LEE56 pKa = 4.4LNHH59 pKa = 6.1NVPYY63 pKa = 10.71AITLNGTGNPGPMPPQGTQDD83 pKa = 3.41YY84 pKa = 10.12EE85 pKa = 4.7RR86 pKa = 11.84IGDD89 pKa = 4.26IINTSGIKK97 pKa = 9.97LRR99 pKa = 11.84LMCGQKK105 pKa = 10.3ADD107 pKa = 4.08RR108 pKa = 11.84PNVTFKK114 pKa = 10.48FWVVQVPKK122 pKa = 10.82GSGYY126 pKa = 10.89SYY128 pKa = 10.77NQWFMNYY135 pKa = 8.56TGNCLLDD142 pKa = 4.13SINTDD147 pKa = 3.72FVKK150 pKa = 10.61ILATHH155 pKa = 5.77TWKK158 pKa = 10.98APEE161 pKa = 4.31TYY163 pKa = 10.02SAEE166 pKa = 4.03TRR168 pKa = 11.84EE169 pKa = 4.2VTFTKK174 pKa = 10.14QWWIPRR180 pKa = 11.84RR181 pKa = 11.84RR182 pKa = 11.84VVKK185 pKa = 10.32FGPTNASLSHH195 pKa = 6.61NDD197 pKa = 3.11SDD199 pKa = 4.8VHH201 pKa = 6.28LLCAAYY207 pKa = 9.75DD208 pKa = 3.64AYY210 pKa = 10.07GTLVTDD216 pKa = 4.42NIAYY220 pKa = 9.15VQLHH224 pKa = 5.82VEE226 pKa = 4.29TFYY229 pKa = 11.24RR230 pKa = 11.84DD231 pKa = 3.33PP232 pKa = 4.9

Molecular weight: 26.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

661

100

329

220.3

25.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.295 ± 1.147

2.118 ± 0.438

6.354 ± 1.274

4.539 ± 0.729

3.782 ± 0.327

6.203 ± 0.61

1.815 ± 0.229

4.539 ± 1.283

7.11 ± 1.163

8.018 ± 1.623

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.874 ± 0.578

3.328 ± 1.155

4.992 ± 0.324

3.48 ± 0.584

6.505 ± 0.965

7.11 ± 2.415

7.413 ± 1.363

6.959 ± 1.067

2.572 ± 0.763

4.992 ± 1.38
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski