Ideonella dechloratans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiales genera incertae sedis; Ideonella

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4151 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A643F6X1|A0A643F6X1_IDEDE RNA-binding protein (Fragment) OS=Ideonella dechloratans OX=36863 GN=F7Q92_19920 PE=4 SV=1
MM1 pKa = 8.0SEE3 pKa = 4.14IASIDD8 pKa = 3.33AGLADD13 pKa = 4.5ARR15 pKa = 11.84AEE17 pKa = 3.98ATRR20 pKa = 11.84AYY22 pKa = 9.32IDD24 pKa = 3.45TGAGQAAVLLYY35 pKa = 10.51DD36 pKa = 4.14ASNVLVASIPLANPCGSVSGGVLTLAEE63 pKa = 4.67SGDD66 pKa = 3.79ALALVDD72 pKa = 4.22GTPAAAAIASANGSVCIYY90 pKa = 9.67GLTVGAPGSGAGVEE104 pKa = 4.49LSTATLFAGGTVRR117 pKa = 11.84LTGGTLSS124 pKa = 3.56

Molecular weight: 11.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A643F3D5|A0A643F3D5_IDEDE Uncharacterized protein OS=Ideonella dechloratans OX=36863 GN=F7Q92_20985 PE=4 SV=1
MM1 pKa = 7.93PPRR4 pKa = 11.84PAPTPRR10 pKa = 11.84HH11 pKa = 5.61RR12 pKa = 11.84RR13 pKa = 11.84LALAALTALVLALHH27 pKa = 6.48GWVLGPAWTTFALRR41 pKa = 11.84HH42 pKa = 5.49APAPARR48 pKa = 11.84ALPVVTLSQVRR59 pKa = 11.84PPPPPAAAPAPAPAPPPP76 pKa = 3.76

Molecular weight: 7.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4151

0

4151

1362198

14

2151

328.2

35.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.402 ± 0.049

0.93 ± 0.014

5.269 ± 0.026

5.316 ± 0.034

3.171 ± 0.025

8.421 ± 0.037

2.366 ± 0.02

3.597 ± 0.029

2.771 ± 0.039

11.485 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.241 ± 0.017

2.208 ± 0.022

5.73 ± 0.03

4.447 ± 0.028

7.309 ± 0.041

5.116 ± 0.03

5.024 ± 0.028

7.477 ± 0.031

1.709 ± 0.02

2.011 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski