Xanthomonas virus CP1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Klementvirus

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 47 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I7GY99|I7GY99_9CAUD GIY-YIG domain-containing protein OS=Xanthomonas virus CP1 OX=1188794 PE=4 SV=1
MM1 pKa = 7.58YY2 pKa = 10.24YY3 pKa = 10.09RR4 pKa = 11.84VDD6 pKa = 3.91IEE8 pKa = 4.66FEE10 pKa = 5.02DD11 pKa = 3.3IHH13 pKa = 8.29GPEE16 pKa = 4.48SLDD19 pKa = 3.55EE20 pKa = 4.49DD21 pKa = 3.9TLEE24 pKa = 4.34YY25 pKa = 11.15YY26 pKa = 9.43LAKK29 pKa = 10.5YY30 pKa = 8.4IRR32 pKa = 11.84KK33 pKa = 9.0YY34 pKa = 10.46CGQAYY39 pKa = 8.12PVEE42 pKa = 4.37VVVMDD47 pKa = 3.83KK48 pKa = 11.3DD49 pKa = 4.33EE50 pKa = 4.17YY51 pKa = 11.04CITYY55 pKa = 9.62QLQVQWHH62 pKa = 7.42RR63 pKa = 11.84DD64 pKa = 3.43TKK66 pKa = 11.14DD67 pKa = 2.67WLGPYY72 pKa = 10.09GMQDD76 pKa = 2.99VVGKK80 pKa = 8.1VLRR83 pKa = 11.84DD84 pKa = 3.3AGEE87 pKa = 4.14YY88 pKa = 9.5PVALSVEE95 pKa = 4.02LLEE98 pKa = 5.02FDD100 pKa = 4.53EE101 pKa = 5.82EE102 pKa = 4.21EE103 pKa = 4.36DD104 pKa = 3.54

Molecular weight: 12.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I7HDH9|I7HDH9_9CAUD Putative head protein OS=Xanthomonas virus CP1 OX=1188794 PE=4 SV=1
MM1 pKa = 7.53RR2 pKa = 11.84RR3 pKa = 11.84GVTGIYY9 pKa = 10.27AITSPSGRR17 pKa = 11.84RR18 pKa = 11.84YY19 pKa = 9.87VGQAVCIRR27 pKa = 11.84ARR29 pKa = 11.84WRR31 pKa = 11.84KK32 pKa = 9.03HH33 pKa = 5.16LSNLHH38 pKa = 6.69RR39 pKa = 11.84DD40 pKa = 3.45QHH42 pKa = 6.43HH43 pKa = 6.63NPLLTNAFRR52 pKa = 11.84KK53 pKa = 10.63YY54 pKa = 10.55GDD56 pKa = 3.63ALVFSVIEE64 pKa = 3.92EE65 pKa = 4.29CLAEE69 pKa = 4.62DD70 pKa = 3.9LTARR74 pKa = 11.84EE75 pKa = 4.31QFHH78 pKa = 6.86MDD80 pKa = 3.13QTPPSMLLNVCPAAGSPLGMKK101 pKa = 10.34RR102 pKa = 11.84SPEE105 pKa = 3.46TRR107 pKa = 11.84ARR109 pKa = 11.84MSAATKK115 pKa = 10.41GKK117 pKa = 10.41AKK119 pKa = 9.5STEE122 pKa = 3.85HH123 pKa = 6.43RR124 pKa = 11.84AKK126 pKa = 10.57LAAANKK132 pKa = 9.83GKK134 pKa = 8.03TLPAEE139 pKa = 4.04QCAKK143 pKa = 10.07IAEE146 pKa = 4.25ALRR149 pKa = 11.84GRR151 pKa = 11.84VHH153 pKa = 6.44SAEE156 pKa = 4.13ARR158 pKa = 11.84TKK160 pKa = 9.39QAEE163 pKa = 4.11AVRR166 pKa = 11.84GKK168 pKa = 9.18MLPNNTSGFCGVRR181 pKa = 11.84RR182 pKa = 11.84NGTGWQAKK190 pKa = 9.78LGLLGSSVYY199 pKa = 10.41FPTRR203 pKa = 11.84PSPEE207 pKa = 3.92AAWALRR213 pKa = 11.84EE214 pKa = 3.91NFLRR218 pKa = 11.84ILYY221 pKa = 10.25YY222 pKa = 10.25YY223 pKa = 10.45DD224 pKa = 3.54HH225 pKa = 7.03SS226 pKa = 4.0

Molecular weight: 25.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

47

0

47

12615

66

1573

268.4

29.39

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.702 ± 0.691

1.118 ± 0.192

5.295 ± 0.232

5.612 ± 0.284

2.933 ± 0.188

8.514 ± 0.279

2.013 ± 0.307

4.233 ± 0.202

4.962 ± 0.369

8.617 ± 0.261

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.418 ± 0.208

4.027 ± 0.232

3.813 ± 0.27

4.511 ± 0.396

5.937 ± 0.297

6.92 ± 0.351

6.294 ± 0.425

7.071 ± 0.282

1.736 ± 0.144

3.274 ± 0.251
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski