Amino acid dipepetide frequency for Black raspberry virus F

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
11.378AlaAla: 11.378 ± 1.142
0.632AlaCys: 0.632 ± 0.467
1.264AlaAsp: 1.264 ± 0.026
4.425AlaGlu: 4.425 ± 2.363
1.896AlaPhe: 1.896 ± 1.402
3.793AlaGly: 3.793 ± 2.804
1.896AlaHis: 1.896 ± 0.493
4.425AlaIle: 4.425 ± 0.545
6.321AlaLys: 6.321 ± 4.415
6.321AlaLeu: 6.321 ± 1.038
3.793AlaMet: 3.793 ± 1.74
3.161AlaAsn: 3.161 ± 0.519
4.425AlaPro: 4.425 ± 2.363
4.425AlaGln: 4.425 ± 1.273
4.425AlaArg: 4.425 ± 0.364
5.057AlaSer: 5.057 ± 0.805
2.528AlaThr: 2.528 ± 0.857
5.689AlaVal: 5.689 ± 0.338
3.793AlaTrp: 3.793 ± 1.895
5.689AlaTyr: 5.689 ± 0.571
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.264CysAsp: 1.264 ± 0.026
1.896CysGlu: 1.896 ± 1.325
0.632CysPhe: 0.632 ± 0.467
0.632CysGly: 0.632 ± 0.467
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.0CysLys: 0.0 ± 0.0
1.264CysLeu: 1.264 ± 0.026
0.0CysMet: 0.0 ± 0.0
0.632CysAsn: 0.632 ± 0.442
0.0CysPro: 0.0 ± 0.0
0.632CysGln: 0.632 ± 0.442
0.0CysArg: 0.0 ± 0.0
0.632CysSer: 0.632 ± 0.467
1.264CysThr: 1.264 ± 0.935
0.632CysVal: 0.632 ± 0.442
0.0CysTrp: 0.0 ± 0.0
0.632CysTyr: 0.632 ± 0.442
0.0CysXaa: 0.0 ± 0.0
Asp
2.528AspAla: 2.528 ± 0.052
1.264AspCys: 1.264 ± 0.935
3.161AspAsp: 3.161 ± 0.519
2.528AspGlu: 2.528 ± 0.961
5.057AspPhe: 5.057 ± 1.714
5.057AspGly: 5.057 ± 3.739
1.264AspHis: 1.264 ± 0.026
1.264AspIle: 1.264 ± 0.026
1.264AspLys: 1.264 ± 0.883
4.425AspLeu: 4.425 ± 1.454
0.632AspMet: 0.632 ± 0.442
1.896AspAsn: 1.896 ± 1.402
1.896AspPro: 1.896 ± 1.402
3.161AspGln: 3.161 ± 2.208
0.632AspArg: 0.632 ± 0.442
2.528AspSer: 2.528 ± 1.766
1.896AspThr: 1.896 ± 1.325
8.85AspVal: 8.85 ± 1.637
1.264AspTrp: 1.264 ± 0.026
5.057AspTyr: 5.057 ± 0.805
0.0AspXaa: 0.0 ± 0.0
Glu
8.217GluAla: 8.217 ± 1.531
1.264GluCys: 1.264 ± 0.883
3.793GluAsp: 3.793 ± 0.078
3.793GluGlu: 3.793 ± 0.078
2.528GluPhe: 2.528 ± 0.052
4.425GluGly: 4.425 ± 1.454
0.632GluHis: 0.632 ± 0.442
5.057GluIle: 5.057 ± 1.714
5.689GluLys: 5.689 ± 3.065
3.161GluLeu: 3.161 ± 0.519
1.896GluMet: 1.896 ± 0.687
1.264GluAsn: 1.264 ± 0.935
3.161GluPro: 3.161 ± 2.337
0.0GluGln: 0.0 ± 0.0
1.896GluArg: 1.896 ± 1.325
3.161GluSer: 3.161 ± 0.39
0.632GluThr: 0.632 ± 0.467
5.057GluVal: 5.057 ± 0.805
2.528GluTrp: 2.528 ± 0.857
1.264GluTyr: 1.264 ± 0.883
0.0GluXaa: 0.0 ± 0.0
Phe
4.425PheAla: 4.425 ± 2.363
0.632PheCys: 0.632 ± 0.442
1.896PheAsp: 1.896 ± 0.416
4.425PheGlu: 4.425 ± 0.545
2.528PhePhe: 2.528 ± 0.961
2.528PheGly: 2.528 ± 0.857
1.264PheHis: 1.264 ± 0.026
1.264PheIle: 1.264 ± 0.935
2.528PheLys: 2.528 ± 0.052
2.528PheLeu: 2.528 ± 0.052
2.528PheMet: 2.528 ± 1.766
1.896PheAsn: 1.896 ± 0.416
1.896PhePro: 1.896 ± 0.493
0.632PheGln: 0.632 ± 0.467
3.161PheArg: 3.161 ± 1.299
4.425PheSer: 4.425 ± 1.454
2.528PheThr: 2.528 ± 0.961
3.161PheVal: 3.161 ± 0.519
0.0PheTrp: 0.0 ± 0.0
1.264PheTyr: 1.264 ± 0.935
0.0PheXaa: 0.0 ± 0.0
Gly
3.793GlyAla: 3.793 ± 0.831
0.632GlyCys: 0.632 ± 0.467
3.161GlyAsp: 3.161 ± 0.519
5.057GlyGlu: 5.057 ± 0.805
6.321GlyPhe: 6.321 ± 1.038
5.057GlyGly: 5.057 ± 2.83
1.264GlyHis: 1.264 ± 0.026
3.161GlyIle: 3.161 ± 1.299
3.793GlyLys: 3.793 ± 0.078
0.632GlyLeu: 0.632 ± 0.467
2.528GlyMet: 2.528 ± 0.052
1.896GlyAsn: 1.896 ± 1.402
2.528GlyPro: 2.528 ± 1.869
1.264GlyGln: 1.264 ± 0.026
4.425GlyArg: 4.425 ± 1.454
3.161GlySer: 3.161 ± 0.39
5.689GlyThr: 5.689 ± 1.48
8.217GlyVal: 8.217 ± 0.286
2.528GlyTrp: 2.528 ± 0.961
3.161GlyTyr: 3.161 ± 0.519
0.0GlyXaa: 0.0 ± 0.0
His
1.264HisAla: 1.264 ± 0.026
0.0HisCys: 0.0 ± 0.0
1.896HisAsp: 1.896 ± 0.416
0.632HisGlu: 0.632 ± 0.442
1.896HisPhe: 1.896 ± 0.493
0.0HisGly: 0.0 ± 0.0
1.896HisHis: 1.896 ± 0.416
0.632HisIle: 0.632 ± 0.467
1.896HisLys: 1.896 ± 1.325
0.0HisLeu: 0.0 ± 0.0
0.632HisMet: 0.632 ± 0.467
1.264HisAsn: 1.264 ± 0.883
0.0HisPro: 0.0 ± 0.0
0.632HisGln: 0.632 ± 0.467
3.793HisArg: 3.793 ± 0.831
3.161HisSer: 3.161 ± 0.39
1.264HisThr: 1.264 ± 0.026
2.528HisVal: 2.528 ± 0.052
0.0HisTrp: 0.0 ± 0.0
0.632HisTyr: 0.632 ± 0.442
0.0HisXaa: 0.0 ± 0.0
Ile
1.896IleAla: 1.896 ± 1.325
0.0IleCys: 0.0 ± 0.0
1.896IleAsp: 1.896 ± 1.402
4.425IleGlu: 4.425 ± 0.545
1.264IlePhe: 1.264 ± 0.026
3.161IleGly: 3.161 ± 1.299
1.264IleHis: 1.264 ± 0.883
1.896IleIle: 1.896 ± 0.493
1.896IleLys: 1.896 ± 0.416
0.632IleLeu: 0.632 ± 0.467
1.264IleMet: 1.264 ± 0.883
4.425IleAsn: 4.425 ± 2.363
1.896IlePro: 1.896 ± 0.493
1.896IleGln: 1.896 ± 0.493
2.528IleArg: 2.528 ± 0.857
6.953IleSer: 6.953 ± 1.221
4.425IleThr: 4.425 ± 0.545
2.528IleVal: 2.528 ± 0.857
1.264IleTrp: 1.264 ± 0.883
3.161IleTyr: 3.161 ± 0.39
0.0IleXaa: 0.0 ± 0.0
Lys
3.161LysAla: 3.161 ± 2.208
0.632LysCys: 0.632 ± 0.442
3.161LysAsp: 3.161 ± 2.208
1.896LysGlu: 1.896 ± 1.325
2.528LysPhe: 2.528 ± 0.052
4.425LysGly: 4.425 ± 1.273
1.264LysHis: 1.264 ± 0.026
2.528LysIle: 2.528 ± 0.857
1.264LysLys: 1.264 ± 0.935
3.161LysLeu: 3.161 ± 1.299
0.632LysMet: 0.632 ± 0.467
1.264LysAsn: 1.264 ± 0.026
3.161LysPro: 3.161 ± 1.299
0.632LysGln: 0.632 ± 0.442
1.896LysArg: 1.896 ± 1.325
4.425LysSer: 4.425 ± 0.364
2.528LysThr: 2.528 ± 0.052
1.896LysVal: 1.896 ± 1.325
0.0LysTrp: 0.0 ± 0.0
5.689LysTyr: 5.689 ± 3.065
0.0LysXaa: 0.0 ± 0.0
Leu
5.689LeuAla: 5.689 ± 0.338
0.632LeuCys: 0.632 ± 0.467
6.953LeuAsp: 6.953 ± 3.323
0.632LeuGlu: 0.632 ± 0.467
2.528LeuPhe: 2.528 ± 0.857
5.057LeuGly: 5.057 ± 0.103
1.264LeuHis: 1.264 ± 0.026
2.528LeuIle: 2.528 ± 0.052
6.953LeuLys: 6.953 ± 1.221
9.482LeuLeu: 9.482 ± 0.648
1.264LeuMet: 1.264 ± 0.292
3.793LeuAsn: 3.793 ± 0.986
3.161LeuPro: 3.161 ± 0.519
0.632LeuGln: 0.632 ± 0.442
8.85LeuArg: 8.85 ± 0.728
6.321LeuSer: 6.321 ± 1.688
5.057LeuThr: 5.057 ± 0.103
5.057LeuVal: 5.057 ± 0.103
0.0LeuTrp: 0.0 ± 0.0
3.161LeuTyr: 3.161 ± 1.428
0.0LeuXaa: 0.0 ± 0.0
Met
2.528MetAla: 2.528 ± 1.766
0.632MetCys: 0.632 ± 0.467
1.264MetAsp: 1.264 ± 0.026
1.264MetGlu: 1.264 ± 0.883
3.161MetPhe: 3.161 ± 1.299
1.896MetGly: 1.896 ± 0.416
1.264MetHis: 1.264 ± 0.026
1.264MetIle: 1.264 ± 0.026
0.0MetLys: 0.0 ± 0.0
2.528MetLeu: 2.528 ± 0.052
0.0MetMet: 0.0 ± 0.0
1.264MetAsn: 1.264 ± 0.883
0.0MetPro: 0.0 ± 0.0
0.0MetGln: 0.0 ± 0.0
1.896MetArg: 1.896 ± 0.416
1.896MetSer: 1.896 ± 0.416
4.425MetThr: 4.425 ± 1.454
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
1.896MetTyr: 1.896 ± 0.493
0.0MetXaa: 0.0 ± 0.0
Asn
3.793AsnAla: 3.793 ± 1.895
0.0AsnCys: 0.0 ± 0.0
1.896AsnAsp: 1.896 ± 1.402
2.528AsnGlu: 2.528 ± 0.052
1.264AsnPhe: 1.264 ± 0.935
1.896AsnGly: 1.896 ± 0.493
1.264AsnHis: 1.264 ± 0.935
3.161AsnIle: 3.161 ± 0.39
0.632AsnLys: 0.632 ± 0.467
6.953AsnLeu: 6.953 ± 1.505
1.264AsnMet: 1.264 ± 0.935
3.793AsnAsn: 3.793 ± 0.078
0.0AsnPro: 0.0 ± 0.0
1.896AsnGln: 1.896 ± 0.493
4.425AsnArg: 4.425 ± 0.545
0.632AsnSer: 0.632 ± 0.467
3.161AsnThr: 3.161 ± 1.299
2.528AsnVal: 2.528 ± 0.961
1.264AsnTrp: 1.264 ± 0.935
1.896AsnTyr: 1.896 ± 0.416
0.0AsnXaa: 0.0 ± 0.0
Pro
3.793ProAla: 3.793 ± 1.895
0.0ProCys: 0.0 ± 0.0
2.528ProAsp: 2.528 ± 0.857
5.057ProGlu: 5.057 ± 1.921
1.896ProPhe: 1.896 ± 1.402
2.528ProGly: 2.528 ± 0.961
0.0ProHis: 0.0 ± 0.0
2.528ProIle: 2.528 ± 0.961
0.0ProLys: 0.0 ± 0.0
4.425ProLeu: 4.425 ± 0.545
0.632ProMet: 0.632 ± 0.467
2.528ProAsn: 2.528 ± 1.869
4.425ProPro: 4.425 ± 0.545
3.161ProGln: 3.161 ± 0.519
0.0ProArg: 0.0 ± 0.0
0.632ProSer: 0.632 ± 0.467
3.161ProThr: 3.161 ± 0.519
2.528ProVal: 2.528 ± 0.052
0.632ProTrp: 0.632 ± 0.467
1.264ProTyr: 1.264 ± 0.026
0.0ProXaa: 0.0 ± 0.0
Gln
4.425GlnAla: 4.425 ± 0.364
0.0GlnCys: 0.0 ± 0.0
1.264GlnAsp: 1.264 ± 0.883
1.264GlnGlu: 1.264 ± 0.026
1.896GlnPhe: 1.896 ± 0.493
1.264GlnGly: 1.264 ± 0.935
1.896GlnHis: 1.896 ± 0.416
1.264GlnIle: 1.264 ± 0.026
1.264GlnLys: 1.264 ± 0.883
1.264GlnLeu: 1.264 ± 0.883
1.264GlnMet: 1.264 ± 0.026
1.896GlnAsn: 1.896 ± 1.402
1.264GlnPro: 1.264 ± 0.026
1.264GlnGln: 1.264 ± 0.935
3.161GlnArg: 3.161 ± 0.39
1.896GlnSer: 1.896 ± 0.416
1.264GlnThr: 1.264 ± 0.026
1.896GlnVal: 1.896 ± 1.325
0.632GlnTrp: 0.632 ± 0.467
2.528GlnTyr: 2.528 ± 0.857
0.0GlnXaa: 0.0 ± 0.0
Arg
8.217ArgAla: 8.217 ± 0.286
1.264ArgCys: 1.264 ± 0.883
0.0ArgAsp: 0.0 ± 0.0
3.793ArgGlu: 3.793 ± 2.649
3.161ArgPhe: 3.161 ± 0.519
6.953ArgGly: 6.953 ± 1.505
2.528ArgHis: 2.528 ± 1.766
4.425ArgIle: 4.425 ± 0.364
3.793ArgLys: 3.793 ± 0.831
7.585ArgLeu: 7.585 ± 0.754
1.264ArgMet: 1.264 ± 0.026
2.528ArgAsn: 2.528 ± 0.961
0.632ArgPro: 0.632 ± 0.467
1.896ArgGln: 1.896 ± 1.325
2.528ArgArg: 2.528 ± 0.857
2.528ArgSer: 2.528 ± 0.857
1.896ArgThr: 1.896 ± 0.493
3.793ArgVal: 3.793 ± 0.831
1.264ArgTrp: 1.264 ± 0.026
1.264ArgTyr: 1.264 ± 0.935
0.0ArgXaa: 0.0 ± 0.0
Ser
8.217SerAla: 8.217 ± 1.531
0.632SerCys: 0.632 ± 0.442
3.161SerAsp: 3.161 ± 1.299
3.161SerGlu: 3.161 ± 0.39
1.264SerPhe: 1.264 ± 0.026
5.057SerGly: 5.057 ± 0.103
1.264SerHis: 1.264 ± 0.935
4.425SerIle: 4.425 ± 2.182
1.896SerLys: 1.896 ± 0.416
3.161SerLeu: 3.161 ± 0.519
2.528SerMet: 2.528 ± 0.052
1.264SerAsn: 1.264 ± 0.026
1.896SerPro: 1.896 ± 0.416
2.528SerGln: 2.528 ± 0.857
4.425SerArg: 4.425 ± 1.273
3.161SerSer: 3.161 ± 0.39
5.689SerThr: 5.689 ± 0.571
6.321SerVal: 6.321 ± 2.597
0.632SerTrp: 0.632 ± 0.467
1.896SerTyr: 1.896 ± 0.493
0.0SerXaa: 0.0 ± 0.0
Thr
4.425ThrAla: 4.425 ± 1.454
0.0ThrCys: 0.0 ± 0.0
1.264ThrAsp: 1.264 ± 0.883
4.425ThrGlu: 4.425 ± 0.545
3.793ThrPhe: 3.793 ± 0.986
5.689ThrGly: 5.689 ± 0.571
0.632ThrHis: 0.632 ± 0.442
3.161ThrIle: 3.161 ± 1.428
0.632ThrLys: 0.632 ± 0.442
8.85ThrLeu: 8.85 ± 1.09
2.528ThrMet: 2.528 ± 0.857
1.264ThrAsn: 1.264 ± 0.883
4.425ThrPro: 4.425 ± 0.364
3.161ThrGln: 3.161 ± 0.519
5.057ThrArg: 5.057 ± 1.012
4.425ThrSer: 4.425 ± 0.545
5.689ThrThr: 5.689 ± 2.388
3.793ThrVal: 3.793 ± 0.986
0.0ThrTrp: 0.0 ± 0.0
1.896ThrTyr: 1.896 ± 0.493
0.0ThrXaa: 0.0 ± 0.0
Val
4.425ValAla: 4.425 ± 1.454
1.264ValCys: 1.264 ± 0.026
9.482ValAsp: 9.482 ± 2.987
4.425ValGlu: 4.425 ± 1.273
0.632ValPhe: 0.632 ± 0.442
3.793ValGly: 3.793 ± 0.831
2.528ValHis: 2.528 ± 1.766
2.528ValIle: 2.528 ± 0.961
5.057ValLys: 5.057 ± 2.623
6.953ValLeu: 6.953 ± 3.039
0.0ValMet: 0.0 ± 0.0
6.321ValAsn: 6.321 ± 0.129
3.793ValPro: 3.793 ± 1.895
3.161ValGln: 3.161 ± 0.39
5.057ValArg: 5.057 ± 1.012
3.793ValSer: 3.793 ± 0.831
5.057ValThr: 5.057 ± 0.103
6.321ValVal: 6.321 ± 0.78
1.896ValTrp: 1.896 ± 0.416
1.896ValTyr: 1.896 ± 0.416
0.0ValXaa: 0.0 ± 0.0
Trp
1.896TrpAla: 1.896 ± 0.416
0.0TrpCys: 0.0 ± 0.0
1.264TrpAsp: 1.264 ± 0.935
1.264TrpGlu: 1.264 ± 0.883
0.0TrpPhe: 0.0 ± 0.0
0.632TrpGly: 0.632 ± 0.467
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.896TrpLeu: 1.896 ± 1.402
0.632TrpMet: 0.632 ± 0.467
0.632TrpAsn: 0.632 ± 0.467
1.264TrpPro: 1.264 ± 0.935
0.632TrpGln: 0.632 ± 0.467
1.264TrpArg: 1.264 ± 0.883
1.896TrpSer: 1.896 ± 1.402
0.632TrpThr: 0.632 ± 0.467
3.161TrpVal: 3.161 ± 2.208
0.0TrpTrp: 0.0 ± 0.0
0.632TrpTyr: 0.632 ± 0.467
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.264TyrAla: 1.264 ± 0.026
0.632TyrCys: 0.632 ± 0.442
5.057TyrAsp: 5.057 ± 1.012
2.528TyrGlu: 2.528 ± 0.857
1.264TyrPhe: 1.264 ± 0.026
4.425TyrGly: 4.425 ± 2.182
0.632TyrHis: 0.632 ± 0.467
3.161TyrIle: 3.161 ± 1.299
1.264TyrLys: 1.264 ± 0.883
4.425TyrLeu: 4.425 ± 1.273
1.264TyrMet: 1.264 ± 0.026
1.264TyrAsn: 1.264 ± 0.935
1.896TyrPro: 1.896 ± 0.493
1.264TyrGln: 1.264 ± 0.935
1.896TyrArg: 1.896 ± 0.493
1.896TyrSer: 1.896 ± 0.416
6.321TyrThr: 6.321 ± 1.038
4.425TyrVal: 4.425 ± 0.545
0.0TyrTrp: 0.0 ± 0.0
1.896TyrTyr: 1.896 ± 0.416
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1583 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski