Persimmon cryptic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Duplopiviricetes; Durnavirales; Partitiviridae; unclassified Partitiviridae

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I4EPL9|I4EPL9_9VIRU Coat protein OS=Persimmon cryptic virus OX=1183241 GN=CP PE=4 SV=1
MM1 pKa = 7.9ALRR4 pKa = 11.84SITGYY9 pKa = 10.15EE10 pKa = 3.73FHH12 pKa = 7.74DD13 pKa = 4.06FQSSLEE19 pKa = 4.3LLNQTHH25 pKa = 5.14IHH27 pKa = 5.36IVRR30 pKa = 11.84RR31 pKa = 11.84EE32 pKa = 4.06SGVTYY37 pKa = 10.15HH38 pKa = 7.71DD39 pKa = 3.92EE40 pKa = 4.1FALCEE45 pKa = 4.03LLVDD49 pKa = 3.6NTRR52 pKa = 11.84LYY54 pKa = 10.15EE55 pKa = 3.97QEE57 pKa = 3.94LEE59 pKa = 4.18GWSRR63 pKa = 11.84SYY65 pKa = 10.01YY66 pKa = 10.1TGEE69 pKa = 3.75QHH71 pKa = 6.39MKK73 pKa = 10.8AILQYY78 pKa = 10.62SLPNTPIQDD87 pKa = 3.17IDD89 pKa = 3.78VGCYY93 pKa = 6.98QQAMTNVQEE102 pKa = 4.56RR103 pKa = 11.84LSSLPIVRR111 pKa = 11.84AFDD114 pKa = 3.43VLTQLDD120 pKa = 3.83QVSFEE125 pKa = 4.25SSSAAGYY132 pKa = 10.44DD133 pKa = 3.42YY134 pKa = 11.25TGAKK138 pKa = 9.43GPKK141 pKa = 9.39NEE143 pKa = 4.37GNHH146 pKa = 4.54EE147 pKa = 3.95RR148 pKa = 11.84AIRR151 pKa = 11.84RR152 pKa = 11.84AKK154 pKa = 9.99AVLWSAIAQDD164 pKa = 4.06GEE166 pKa = 4.64GIEE169 pKa = 4.26HH170 pKa = 6.53VLRR173 pKa = 11.84SSVPDD178 pKa = 3.17VGYY181 pKa = 8.77TRR183 pKa = 11.84TQLTDD188 pKa = 3.48LSEE191 pKa = 4.12KK192 pKa = 9.74TKK194 pKa = 10.6VRR196 pKa = 11.84GVWGRR201 pKa = 11.84AFHH204 pKa = 6.63YY205 pKa = 9.76ILPEE209 pKa = 4.15GTSADD214 pKa = 3.84PLLQAFKK221 pKa = 10.87EE222 pKa = 4.45GGTFYY227 pKa = 10.77HH228 pKa = 7.2IGQDD232 pKa = 3.49PTVSVPYY239 pKa = 10.01ILSDD243 pKa = 3.6TAGKK247 pKa = 9.67CAWLYY252 pKa = 11.14ALDD255 pKa = 3.85WSSFDD260 pKa = 3.26ATVSRR265 pKa = 11.84FEE267 pKa = 3.48IHH269 pKa = 7.07AAFDD273 pKa = 3.93LLKK276 pKa = 10.62QRR278 pKa = 11.84IEE280 pKa = 4.08FPNFEE285 pKa = 4.2TEE287 pKa = 3.56QCYY290 pKa = 9.72EE291 pKa = 3.47ICRR294 pKa = 11.84QLFIHH299 pKa = 6.58KK300 pKa = 9.99KK301 pKa = 8.91IAAPDD306 pKa = 3.68GKK308 pKa = 10.84VYY310 pKa = 9.56WAHH313 pKa = 6.77KK314 pKa = 8.99GIPSGSYY321 pKa = 6.92YY322 pKa = 10.46TSIIGSIINRR332 pKa = 11.84LRR334 pKa = 11.84IEE336 pKa = 4.37YY337 pKa = 9.63IWIKK341 pKa = 10.68LRR343 pKa = 11.84GHH345 pKa = 6.83GPTICYY351 pKa = 7.61TQGDD355 pKa = 4.29DD356 pKa = 4.56SLCGDD361 pKa = 4.47DD362 pKa = 5.6EE363 pKa = 5.59RR364 pKa = 11.84IEE366 pKa = 4.09PEE368 pKa = 4.58RR369 pKa = 11.84IADD372 pKa = 3.46IANPIGWLINPAKK385 pKa = 9.63TATTRR390 pKa = 11.84YY391 pKa = 9.02PEE393 pKa = 4.52YY394 pKa = 9.68ITFLGRR400 pKa = 11.84TCYY403 pKa = 10.48GGLNHH408 pKa = 7.54RR409 pKa = 11.84DD410 pKa = 3.64LIRR413 pKa = 11.84CLRR416 pKa = 11.84LLIYY420 pKa = 10.05PEE422 pKa = 4.19YY423 pKa = 9.12PVPSGAISAYY433 pKa = 8.96RR434 pKa = 11.84ANSIAEE440 pKa = 4.24DD441 pKa = 3.75CGGTSSILNDD451 pKa = 2.94IARR454 pKa = 11.84RR455 pKa = 11.84LTRR458 pKa = 11.84KK459 pKa = 9.33YY460 pKa = 10.34GRR462 pKa = 11.84VSHH465 pKa = 6.5EE466 pKa = 4.1EE467 pKa = 3.85VPKK470 pKa = 9.45EE471 pKa = 3.62LRR473 pKa = 11.84VYY475 pKa = 10.48RR476 pKa = 11.84HH477 pKa = 5.74

Molecular weight: 54.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I4EPL9|I4EPL9_9VIRU Coat protein OS=Persimmon cryptic virus OX=1183241 GN=CP PE=4 SV=1
MM1 pKa = 7.94ADD3 pKa = 3.05QGNNEE8 pKa = 4.22TPLPVQATQPAANSDD23 pKa = 4.43RR24 pKa = 11.84IPITTLPAPRR34 pKa = 11.84SQAPNKK40 pKa = 9.78PEE42 pKa = 3.77YY43 pKa = 10.89ARR45 pKa = 11.84IADD48 pKa = 4.0SLEE51 pKa = 4.12DD52 pKa = 3.71EE53 pKa = 4.49YY54 pKa = 11.5QIGFQRR60 pKa = 11.84INPRR64 pKa = 11.84LHH66 pKa = 5.76RR67 pKa = 11.84RR68 pKa = 11.84YY69 pKa = 10.4VILRR73 pKa = 11.84SQEE76 pKa = 3.73LHH78 pKa = 7.43DD79 pKa = 4.51RR80 pKa = 11.84LCNLYY85 pKa = 10.58APYY88 pKa = 9.79FQAGYY93 pKa = 10.23RR94 pKa = 11.84VFKK97 pKa = 10.53HH98 pKa = 6.09VIEE101 pKa = 5.3AYY103 pKa = 9.25PLPAGYY109 pKa = 10.54ASQIAYY115 pKa = 7.69ATACYY120 pKa = 9.86VSSWCWDD127 pKa = 3.51LYY129 pKa = 10.04VSIRR133 pKa = 11.84EE134 pKa = 4.27SVKK137 pKa = 10.69KK138 pKa = 10.84LSQTAFLQQYY148 pKa = 6.6QTEE151 pKa = 4.4QFHH154 pKa = 6.07SQDD157 pKa = 3.19RR158 pKa = 11.84YY159 pKa = 11.57DD160 pKa = 4.73PFLQHH165 pKa = 6.96LNTVIRR171 pKa = 11.84PTHH174 pKa = 5.84IPGGLEE180 pKa = 3.76DD181 pKa = 4.13SLYY184 pKa = 10.52IPLIANHH191 pKa = 5.71VQWGNQSPFGINHH204 pKa = 5.36YY205 pKa = 10.26AINEE209 pKa = 4.24SLVQGLLDD217 pKa = 5.32VMDD220 pKa = 5.37LKK222 pKa = 11.49NNTWRR227 pKa = 11.84TVPLSHH233 pKa = 7.27DD234 pKa = 3.54TLGRR238 pKa = 11.84PMWLLDD244 pKa = 3.03WRR246 pKa = 11.84QNQAYY251 pKa = 9.98AWFPQEE257 pKa = 3.7NHH259 pKa = 6.09FSKK262 pKa = 10.93EE263 pKa = 3.84DD264 pKa = 3.83LIAAHH269 pKa = 7.09ILGIPCSPRR278 pKa = 11.84LGPRR282 pKa = 11.84DD283 pKa = 3.32VDD285 pKa = 3.13DD286 pKa = 3.75WQFFPGNVMPQHH298 pKa = 6.32INIAAYY304 pKa = 9.43EE305 pKa = 4.02RR306 pKa = 11.84AIPRR310 pKa = 11.84RR311 pKa = 11.84FFGAAEE317 pKa = 3.92YY318 pKa = 8.56RR319 pKa = 11.84TISTRR324 pKa = 11.84MWEE327 pKa = 4.44LPFLSAVAGQMSGAKK342 pKa = 9.71RR343 pKa = 11.84PAPEE347 pKa = 4.11SSATGSGYY355 pKa = 9.26MEE357 pKa = 4.74SPPAVEE363 pKa = 4.62GQQTAAIMDD372 pKa = 4.47PGIMQTRR379 pKa = 11.84YY380 pKa = 9.48CQYY383 pKa = 10.96QIIDD387 pKa = 3.29WCYY390 pKa = 8.43HH391 pKa = 4.39GRR393 pKa = 11.84VILNLNAQKK402 pKa = 10.58QNQALRR408 pKa = 11.84SILFSPNN415 pKa = 2.57

Molecular weight: 47.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

892

415

477

446.0

50.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.072 ± 0.697

1.794 ± 0.224

5.045 ± 0.3

5.717 ± 0.887

3.363 ± 0.161

6.278 ± 0.783

3.251 ± 0.076

7.511 ± 0.491

2.803 ± 0.562

8.408 ± 0.138

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.345 ± 0.529

3.812 ± 0.802

6.054 ± 1.22

5.83 ± 1.364

6.839 ± 0.214

6.726 ± 0.297

5.157 ± 0.682

4.372 ± 0.177

2.018 ± 0.252

5.605 ± 0.196
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski