Zoogloea oleivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Zoogloeaceae; Zoogloea

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4972 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6C2D181|A0A6C2D181_9RHOO 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase OS=Zoogloea oleivorans OX=1552750 GN=uraD PE=4 SV=1
MM1 pKa = 7.58SGGGDD6 pKa = 3.3VTRR9 pKa = 11.84FTIDD13 pKa = 3.39PDD15 pKa = 3.49TGALSFLTAPDD26 pKa = 3.86FEE28 pKa = 4.7VPQDD32 pKa = 3.27EE33 pKa = 4.83GANNVYY39 pKa = 10.6DD40 pKa = 4.36VIVQVMDD47 pKa = 4.18GANSTAIQAITVTVTAVNDD66 pKa = 3.6NAPVLTSNGGGVMAAVTIAEE86 pKa = 4.41STTLVTTLTATDD98 pKa = 3.7SDD100 pKa = 4.53LPGDD104 pKa = 3.66TLYY107 pKa = 11.42YY108 pKa = 10.34SIVGGADD115 pKa = 2.98AAKK118 pKa = 10.0FAIDD122 pKa = 3.79TFSGALNFALAPDD135 pKa = 3.96YY136 pKa = 10.86DD137 pKa = 3.97LPGDD141 pKa = 3.65VGGDD145 pKa = 3.46NIYY148 pKa = 11.15DD149 pKa = 3.69VIVRR153 pKa = 11.84VDD155 pKa = 3.45DD156 pKa = 3.35GTYY159 pKa = 10.97AVNQSLAITVSNTNEE174 pKa = 3.89APAVTITSTSYY185 pKa = 9.72TATEE189 pKa = 3.81QSALVLGGTGLSISDD204 pKa = 4.08ADD206 pKa = 3.86AGSHH210 pKa = 5.08VVSARR215 pKa = 11.84LNVVSGTLSATAGSSGVTITGSGTASLVFDD245 pKa = 3.97GTLAQINDD253 pKa = 3.78FLAGKK258 pKa = 9.94LGASLTYY265 pKa = 10.55LIDD268 pKa = 4.02IDD270 pKa = 4.49TPPASDD276 pKa = 3.86TLTLAADD283 pKa = 4.26DD284 pKa = 4.9LGHH287 pKa = 6.6TGSGTAASGSKK298 pKa = 10.23SVLINITAVNDD309 pKa = 4.13GPANTTPGTQVTLVNTPLVFGVSHH333 pKa = 6.63GNALSVTDD341 pKa = 4.51SDD343 pKa = 4.42AAANPLQISLVATHH357 pKa = 6.43GTLTLGNTTGLTFVSGDD374 pKa = 3.37GAADD378 pKa = 3.25AGMTFTGTQASINAALEE395 pKa = 4.28GLSYY399 pKa = 10.79TPTAAYY405 pKa = 8.09TGTATISLGSADD417 pKa = 3.71QGNTGGGVLSDD428 pKa = 3.82SDD430 pKa = 4.38TINIQIGASRR440 pKa = 11.84YY441 pKa = 6.8QQGLDD446 pKa = 3.62GYY448 pKa = 9.17TGMEE452 pKa = 4.13DD453 pKa = 3.55TYY455 pKa = 10.96LDD457 pKa = 3.79SVTPDD462 pKa = 2.9SSYY465 pKa = 11.97GNASTVLVDD474 pKa = 4.39DD475 pKa = 5.53GSPVSQGLLRR485 pKa = 11.84FDD487 pKa = 5.25GIFGDD492 pKa = 4.65GVGQIPFGSTINSASLSFYY511 pKa = 10.96VINQDD516 pKa = 3.35AADD519 pKa = 3.99SVSLHH524 pKa = 5.8TMLTNWTEE532 pKa = 3.71NATWNTLGAGIQTNGVEE549 pKa = 4.35AVGTPVATFSAGASGWNTIGGLDD572 pKa = 3.69ASVQIWANGGANYY585 pKa = 9.89GWSLLTANPGADD597 pKa = 2.6SWTFASSEE605 pKa = 4.09YY606 pKa = 9.78STLNLRR612 pKa = 11.84PYY614 pKa = 10.85LVITYY619 pKa = 7.4TPPEE623 pKa = 4.19APVITSNGGGASGVVSVPEE642 pKa = 3.99NTTSVTTVTATDD654 pKa = 3.57ADD656 pKa = 3.93SAQTVLRR663 pKa = 11.84YY664 pKa = 10.2SIVGGADD671 pKa = 3.05STRR674 pKa = 11.84FSINEE679 pKa = 3.97TTGVLSFLTAPDD691 pKa = 4.02FEE693 pKa = 5.25NPLDD697 pKa = 3.56IGGNNIYY704 pKa = 10.43DD705 pKa = 3.43ITVQVSDD712 pKa = 4.52GLLSSTQVLAVSVGAVNDD730 pKa = 3.72NAPLITIPAAVWITEE745 pKa = 3.72NSTAVATITVSDD757 pKa = 4.05SDD759 pKa = 4.12RR760 pKa = 11.84PAQSFSYY767 pKa = 10.42SLAGGVDD774 pKa = 3.16AALFTINTSTGDD786 pKa = 3.76LRR788 pKa = 11.84FLSAPDD794 pKa = 3.76FEE796 pKa = 5.3SPLDD800 pKa = 3.84AGGDD804 pKa = 3.45NVYY807 pKa = 10.93DD808 pKa = 3.47VTVQVSDD815 pKa = 3.77SDD817 pKa = 4.28GSTSTQAIAVTVTSADD833 pKa = 3.33DD834 pKa = 3.58SAPVITSPSVVFVAEE849 pKa = 3.94NTTEE853 pKa = 3.89VMTITASDD861 pKa = 3.84ADD863 pKa = 3.89QPAQALSYY871 pKa = 10.47SLAGGADD878 pKa = 3.44VARR881 pKa = 11.84FTIDD885 pKa = 3.25PVSGILRR892 pKa = 11.84FVRR895 pKa = 11.84APGFGVPADD904 pKa = 3.71ANRR907 pKa = 11.84DD908 pKa = 3.36NVYY911 pKa = 10.96DD912 pKa = 3.96VIVRR916 pKa = 11.84VSDD919 pKa = 3.83GVLTGTQALSVSVEE933 pKa = 4.0NRR935 pKa = 11.84NEE937 pKa = 3.89MPQGRR942 pKa = 11.84DD943 pKa = 2.86GRR945 pKa = 11.84VQMLEE950 pKa = 4.38DD951 pKa = 3.7GTHH954 pKa = 6.06TFTLASFGFMDD965 pKa = 5.62ARR967 pKa = 11.84DD968 pKa = 3.83TPANNLAAVQIIAGPAKK985 pKa = 10.22GVLSLGGQVVANGQWITAGDD1005 pKa = 3.58IAAGLLSYY1013 pKa = 10.37TPAADD1018 pKa = 3.77GTGAAYY1024 pKa = 9.73AALTFRR1030 pKa = 11.84VRR1032 pKa = 11.84DD1033 pKa = 3.89DD1034 pKa = 3.63GGTAGGGSDD1043 pKa = 4.05TEE1045 pKa = 4.68TGSHH1049 pKa = 5.27TLVIGVTGVNDD1060 pKa = 3.76VPVGSADD1067 pKa = 3.42IYY1069 pKa = 11.23RR1070 pKa = 11.84LDD1072 pKa = 4.0EE1073 pKa = 4.89DD1074 pKa = 4.07SVLDD1078 pKa = 3.67VLAPGVLANDD1088 pKa = 4.27PDD1090 pKa = 4.51LDD1092 pKa = 4.25GDD1094 pKa = 3.95MLVAEE1099 pKa = 4.95LVSGPTNGTLVLAADD1114 pKa = 4.28GSFRR1118 pKa = 11.84YY1119 pKa = 7.94TPSANWSGTEE1129 pKa = 3.96SFSYY1133 pKa = 10.56RR1134 pKa = 11.84PFDD1137 pKa = 4.3GIVYY1141 pKa = 10.48GDD1143 pKa = 3.6TTQVILVVEE1152 pKa = 4.63AVNDD1156 pKa = 3.65APEE1159 pKa = 4.87IIHH1162 pKa = 7.12ASFKK1166 pKa = 10.58VPGGGVVVLNADD1178 pKa = 3.35MMIASDD1184 pKa = 4.11VDD1186 pKa = 3.9SLPTSIHH1193 pKa = 5.51FQVDD1197 pKa = 3.48QVDD1200 pKa = 3.54NGHH1203 pKa = 6.51FEE1205 pKa = 4.49LVSAPGQAIRR1215 pKa = 11.84QFSYY1219 pKa = 11.55AEE1221 pKa = 3.89LAAGLVV1227 pKa = 3.63

Molecular weight: 124.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6C2CYH3|A0A6C2CYH3_9RHOO Glutamate dehydrogenase OS=Zoogloea oleivorans OX=1552750 GN=ETQ85_10755 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.6RR14 pKa = 11.84THH16 pKa = 5.75GFLVRR21 pKa = 11.84MGTRR25 pKa = 11.84GGRR28 pKa = 11.84KK29 pKa = 8.93VIAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.0GRR39 pKa = 11.84HH40 pKa = 4.92RR41 pKa = 11.84LAVV44 pKa = 3.37

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4972

0

4972

1663900

24

4131

334.7

36.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.985 ± 0.042

0.981 ± 0.012

5.494 ± 0.024

5.76 ± 0.032

3.638 ± 0.021

8.155 ± 0.044

2.247 ± 0.017

4.828 ± 0.023

3.495 ± 0.035

10.951 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.267 ± 0.019

2.768 ± 0.023

5.079 ± 0.027

3.575 ± 0.021

6.996 ± 0.04

5.61 ± 0.03

5.165 ± 0.043

7.391 ± 0.031

1.358 ± 0.015

2.256 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski