Sphingorhabdus soli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingorhabdus

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2468 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C6UN05|A0A5C6UN05_9SPHN DNA gyrase inhibitor YacG OS=Sphingorhabdus soli OX=2601267 GN=yacG PE=3 SV=1
MM1 pKa = 6.69PTIYY5 pKa = 9.79VTDD8 pKa = 3.59RR9 pKa = 11.84AGNEE13 pKa = 3.82RR14 pKa = 11.84AVEE17 pKa = 4.02AKK19 pKa = 9.82PGYY22 pKa = 10.39SVMEE26 pKa = 4.63TIRR29 pKa = 11.84DD30 pKa = 3.51AGFDD34 pKa = 4.3DD35 pKa = 6.0LLALCGGCCSCATCHH50 pKa = 5.99VVVDD54 pKa = 4.43DD55 pKa = 4.79AQLSLLPAMSEE66 pKa = 4.86DD67 pKa = 4.28EE68 pKa = 5.69DD69 pKa = 5.04DD70 pKa = 5.46LLDD73 pKa = 4.51SSDD76 pKa = 3.26HH77 pKa = 5.61RR78 pKa = 11.84TAGSRR83 pKa = 11.84LSCQIDD89 pKa = 3.5VSDD92 pKa = 4.81ALDD95 pKa = 3.82GLKK98 pKa = 8.98VTIAPEE104 pKa = 3.91DD105 pKa = 3.37

Molecular weight: 11.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C6U973|A0A5C6U973_9SPHN Recombinase family protein OS=Sphingorhabdus soli OX=2601267 GN=FSZ31_11895 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.89GFFARR21 pKa = 11.84KK22 pKa = 7.44ATPGGRR28 pKa = 11.84NILRR32 pKa = 11.84ARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.02KK41 pKa = 10.61LSAA44 pKa = 4.03

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2468

0

2468

779872

31

1584

316.0

34.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.591 ± 0.077

0.781 ± 0.014

6.576 ± 0.042

5.223 ± 0.05

3.45 ± 0.034

8.846 ± 0.052

1.952 ± 0.024

5.423 ± 0.033

3.184 ± 0.041

9.525 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.416 ± 0.023

2.539 ± 0.03

5.13 ± 0.034

2.887 ± 0.028

7.147 ± 0.053

5.352 ± 0.041

5.323 ± 0.036

7.113 ± 0.038

1.34 ± 0.02

2.202 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski