Jatrophihabitans endophyticus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Jatrophihabitantales; Jatrophihabitantaceae; Jatrophihabitans

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4181 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5C0L1|A0A1M5C0L1_9ACTN Uncharacterized protein OS=Jatrophihabitans endophyticus OX=1206085 GN=SAMN05443575_0061 PE=4 SV=1
MM1 pKa = 7.38NIWLKK6 pKa = 10.84RR7 pKa = 11.84SLQMGLLGAGVWLVGTGIAEE27 pKa = 4.74ADD29 pKa = 3.74TAPAVPPSQVSLAHH43 pKa = 6.19VDD45 pKa = 2.83VDD47 pKa = 4.05VPVTVGHH54 pKa = 5.6NHH56 pKa = 3.79VTVANGSGDD65 pKa = 3.6ASAHH69 pKa = 6.22SDD71 pKa = 3.14TSAKK75 pKa = 10.32AGSSSGSSSRR85 pKa = 11.84SSVVDD90 pKa = 3.37VSVHH94 pKa = 4.96VPVTVSDD101 pKa = 3.54NDD103 pKa = 3.49MAVADD108 pKa = 4.66GSNSGGSNSGGSNSGGSNSGGSNSGGSNSGGSKK141 pKa = 9.55DD142 pKa = 3.48TDD144 pKa = 3.29NGGSAKK150 pKa = 10.43SGADD154 pKa = 3.08NGGDD158 pKa = 3.41EE159 pKa = 5.38KK160 pKa = 11.45GGADD164 pKa = 3.23AKK166 pKa = 10.6QRR168 pKa = 11.84SLVSVPVSAPITVAGNAVGVLGDD191 pKa = 4.5ADD193 pKa = 4.02SSSTGAGSAGSGGASASDD211 pKa = 3.65GAVEE215 pKa = 4.42VPVNAPVTVCGNGVGVLGEE234 pKa = 4.22GTADD238 pKa = 3.6CGAGSTSSGASGDD251 pKa = 3.58GSLVEE256 pKa = 4.43VPVNAPVTVCGNGVGVAGDD275 pKa = 3.68AAAGCGAGSAGSTSTGSGGASASDD299 pKa = 3.65GAVEE303 pKa = 4.42VPVNAPVTVCGNGVGVAGDD322 pKa = 3.68AAAGCGAGSAGSTSTGSGGASASDD346 pKa = 3.75GAVEE350 pKa = 4.42APVNAPVTVCGNGVGVAGDD369 pKa = 3.68AAAGCGAGSAGSTSTGSGGASASDD393 pKa = 3.65GAVEE397 pKa = 4.42VPVNAPVTVCGNGVGALGDD416 pKa = 3.85ASADD420 pKa = 3.78CASGSTGGATTGGSDD435 pKa = 3.44GSTGGDD441 pKa = 3.38DD442 pKa = 3.73GSVAEE447 pKa = 4.7VPVNAPVTVCGNGVGVAGDD466 pKa = 3.68AAAGCGAGSTAGSSTGSGASTGNDD490 pKa = 2.84GGVAEE495 pKa = 4.85VPVNAPVTVCGNGVGALGDD514 pKa = 3.76ASADD518 pKa = 3.78CTSGSTGGATTGGSDD533 pKa = 3.44GSTGGDD539 pKa = 3.38DD540 pKa = 3.73GSVAEE545 pKa = 4.7VPVNAPVTVCGNGVGALGDD564 pKa = 3.76ASADD568 pKa = 3.78CTSGSTGGATTGGSDD583 pKa = 3.44GSTGGDD589 pKa = 3.41DD590 pKa = 4.12TIVDD594 pKa = 4.01VPVEE598 pKa = 4.26VPVTVCGNAVGSADD612 pKa = 3.92SSCSTTTTTGGGTDD626 pKa = 3.3GGTDD630 pKa = 3.29GGTVTVPVDD639 pKa = 3.63TPVTVCGNGVGLLGTASASCSTGGDD664 pKa = 3.4TPGTNDD670 pKa = 4.63PGTNDD675 pKa = 4.35PGSNDD680 pKa = 4.02PGTNDD685 pKa = 4.44PGSNDD690 pKa = 3.87PGSDD694 pKa = 3.35NPTVTDD700 pKa = 4.0PVNAGSDD707 pKa = 3.73TTVEE711 pKa = 4.39AATSTPDD718 pKa = 3.01SHH720 pKa = 9.44SSDD723 pKa = 3.33TVGGGRR729 pKa = 11.84QLAQTGADD737 pKa = 3.28TRR739 pKa = 11.84GVLVGAVLLMLLGCVLGFAGRR760 pKa = 11.84RR761 pKa = 11.84RR762 pKa = 11.84TNGG765 pKa = 2.91

Molecular weight: 68.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5R2U3|A0A1M5R2U3_9ACTN YD repeat-containing protein OS=Jatrophihabitans endophyticus OX=1206085 GN=SAMN05443575_3423 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.51LLKK22 pKa = 8.15KK23 pKa = 9.25TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.81KK32 pKa = 9.63

Molecular weight: 4.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4181

0

4181

1383085

29

7281

330.8

35.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.472 ± 0.064

0.727 ± 0.009

6.523 ± 0.037

4.798 ± 0.042

2.693 ± 0.026

9.438 ± 0.04

2.165 ± 0.019

3.076 ± 0.027

1.697 ± 0.029

10.031 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.517 ± 0.014

1.717 ± 0.02

5.7 ± 0.029

2.634 ± 0.022

8.22 ± 0.051

5.117 ± 0.041

6.473 ± 0.048

9.652 ± 0.037

1.379 ± 0.014

1.971 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski