Achromobacter sp. DMS1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter; unclassified Achromobacter

Average proteome isoelectric point is 7.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3366 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0L8EN01|A0A0L8EN01_9BURK Uncharacterized protein OS=Achromobacter sp. DMS1 OX=1688405 GN=AD428_18105 PE=4 SV=1
MM1 pKa = 6.51THH3 pKa = 6.28VVTEE7 pKa = 3.94NCIKK11 pKa = 10.53CKK13 pKa = 10.04YY14 pKa = 7.62TDD16 pKa = 4.08CVDD19 pKa = 3.61VCPVDD24 pKa = 4.18CFRR27 pKa = 11.84EE28 pKa = 4.9GPNFLVIDD36 pKa = 4.26PDD38 pKa = 3.65EE39 pKa = 5.79CIDD42 pKa = 3.87CAVCIPEE49 pKa = 4.56CPANAIYY56 pKa = 10.74AEE58 pKa = 4.15EE59 pKa = 5.28DD60 pKa = 3.67VPQDD64 pKa = 3.28QLKK67 pKa = 10.55FIAINAEE74 pKa = 4.07LSPEE78 pKa = 3.93FPTISRR84 pKa = 11.84AKK86 pKa = 10.34KK87 pKa = 8.84PLPDD91 pKa = 4.03ADD93 pKa = 3.64EE94 pKa = 4.39WNGVQDD100 pKa = 3.49KK101 pKa = 10.62LQYY104 pKa = 10.41LEE106 pKa = 4.29KK107 pKa = 10.85

Molecular weight: 12.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0L8EKP6|A0A0L8EKP6_9BURK ATP-dependent DNA helicase (Fragment) OS=Achromobacter sp. DMS1 OX=1688405 GN=AD428_23260 PE=4 SV=1
MM1 pKa = 7.37TMPRR5 pKa = 11.84TRR7 pKa = 11.84RR8 pKa = 11.84PAPLRR13 pKa = 11.84RR14 pKa = 11.84AWIRR18 pKa = 11.84SRR20 pKa = 11.84PGRR23 pKa = 11.84GRR25 pKa = 11.84PGGGPGRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84TRR37 pKa = 11.84WWPTWKK43 pKa = 10.33SSPPPPTPLARR54 pKa = 11.84PRR56 pKa = 11.84IAALLPSRR64 pKa = 11.84HH65 pKa = 4.88WAVAARR71 pKa = 11.84RR72 pKa = 11.84AGCRR76 pKa = 11.84AGRR79 pKa = 11.84RR80 pKa = 3.66

Molecular weight: 9.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3366

0

3366

969022

29

1757

287.9

31.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.788 ± 0.051

0.939 ± 0.014

5.232 ± 0.033

5.329 ± 0.038

3.532 ± 0.028

8.513 ± 0.041

2.17 ± 0.022

4.504 ± 0.034

3.024 ± 0.034

10.652 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.555 ± 0.021

2.568 ± 0.024

5.383 ± 0.029

3.752 ± 0.032

7.508 ± 0.047

5.219 ± 0.029

4.794 ± 0.031

7.586 ± 0.035

1.394 ± 0.018

2.558 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski