Jeotgalicoccus saudimassiliensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Jeotgalicoccus

Average proteome isoelectric point is 5.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2181 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A078MED2|A0A078MED2_9STAP D-alanyl-D-alanine carboxypeptidase OS=Jeotgalicoccus saudimassiliensis OX=1461582 GN=vanY PE=4 SV=1
MM1 pKa = 6.65STKK4 pKa = 10.53NFLIMVGGILAVLFFLLALAIRR26 pKa = 11.84AEE28 pKa = 4.17MGGDD32 pKa = 3.5DD33 pKa = 4.07TGTAGKK39 pKa = 8.04TAGDD43 pKa = 3.64TEE45 pKa = 4.34EE46 pKa = 4.22QQTEE50 pKa = 4.42TEE52 pKa = 4.29SQEE55 pKa = 3.98TALNLNDD62 pKa = 3.58SPLYY66 pKa = 10.29AVHH69 pKa = 7.33EE70 pKa = 4.29DD71 pKa = 3.56TAPVFQYY78 pKa = 10.97QSGVDD83 pKa = 3.15IPYY86 pKa = 10.02PEE88 pKa = 4.69EE89 pKa = 4.14GVKK92 pKa = 10.55GIYY95 pKa = 7.99VTAYY99 pKa = 8.8SAGGEE104 pKa = 4.08RR105 pKa = 11.84MPEE108 pKa = 4.6LIDD111 pKa = 3.95LVNNTGLNSMVIDD124 pKa = 3.89VKK126 pKa = 11.23EE127 pKa = 4.59DD128 pKa = 2.87IGDD131 pKa = 3.15IMMPLDD137 pKa = 3.68VDD139 pKa = 3.43NDD141 pKa = 3.2IVRR144 pKa = 11.84NHH146 pKa = 6.35MYY148 pKa = 10.58DD149 pKa = 3.54YY150 pKa = 11.19VDD152 pKa = 4.32PKK154 pKa = 11.61ALMTTMEE161 pKa = 4.36EE162 pKa = 4.04NEE164 pKa = 4.39IYY166 pKa = 10.22PIARR170 pKa = 11.84IVVFKK175 pKa = 10.57DD176 pKa = 2.7SRR178 pKa = 11.84LAMEE182 pKa = 5.26RR183 pKa = 11.84PDD185 pKa = 4.91LSYY188 pKa = 11.31LNPDD192 pKa = 2.89GSVWQNGSGEE202 pKa = 4.41SFVNPFLKK210 pKa = 10.41EE211 pKa = 3.71VWDD214 pKa = 4.05YY215 pKa = 11.61NVDD218 pKa = 3.66VAIEE222 pKa = 3.81AAKK225 pKa = 10.72LGFKK229 pKa = 9.94EE230 pKa = 3.86IQFDD234 pKa = 3.86YY235 pKa = 11.38VRR237 pKa = 11.84FPEE240 pKa = 4.58SFDD243 pKa = 3.63TLSSGLTYY251 pKa = 11.02DD252 pKa = 3.4FGEE255 pKa = 4.5YY256 pKa = 10.89ANTEE260 pKa = 3.9ADD262 pKa = 3.37EE263 pKa = 4.23VQQRR267 pKa = 11.84VNAVTDD273 pKa = 4.36FVAYY277 pKa = 10.1ASEE280 pKa = 3.97QLKK283 pKa = 10.61PYY285 pKa = 10.5DD286 pKa = 3.32VDD288 pKa = 3.61VSVDD292 pKa = 3.43VFGYY296 pKa = 10.81AATQRR301 pKa = 11.84EE302 pKa = 4.44APGIGQNFSQIADD315 pKa = 3.56NVDD318 pKa = 3.9IISSMIYY325 pKa = 8.5PSHH328 pKa = 6.27WGAYY332 pKa = 9.46SFDD335 pKa = 3.15IAAPDD340 pKa = 3.76TEE342 pKa = 4.82PYY344 pKa = 10.95AVVDD348 pKa = 3.09QYY350 pKa = 11.61MKK352 pKa = 11.02VEE354 pKa = 3.98NEE356 pKa = 3.89VLGVLEE362 pKa = 4.99EE363 pKa = 4.52PPEE366 pKa = 4.12SRR368 pKa = 11.84PWIQDD373 pKa = 2.74FTAGDD378 pKa = 4.57LGPGNYY384 pKa = 8.56IEE386 pKa = 4.69YY387 pKa = 10.06NAPEE391 pKa = 4.25VEE393 pKa = 4.2AQIQALKK400 pKa = 11.1DD401 pKa = 3.58NGIDD405 pKa = 5.75EE406 pKa = 4.46YY407 pKa = 11.77LLWNAQNEE415 pKa = 4.39YY416 pKa = 11.03SEE418 pKa = 4.27GTEE421 pKa = 4.05YY422 pKa = 10.86QQ423 pKa = 3.2

Molecular weight: 47.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A078MCC8|A0A078MCC8_9STAP YciI-like protein OS=Jeotgalicoccus saudimassiliensis OX=1461582 GN=BN1048_01969 PE=3 SV=1
MM1 pKa = 7.49VKK3 pKa = 9.1RR4 pKa = 11.84TYY6 pKa = 10.42QPNKK10 pKa = 8.33RR11 pKa = 11.84KK12 pKa = 9.38RR13 pKa = 11.84AKK15 pKa = 9.1VHH17 pKa = 5.5GFRR20 pKa = 11.84EE21 pKa = 4.12RR22 pKa = 11.84MSTKK26 pKa = 10.23NGRR29 pKa = 11.84KK30 pKa = 8.49VLARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.05GRR40 pKa = 11.84KK41 pKa = 8.7VLSAA45 pKa = 4.05

Molecular weight: 5.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2181

0

2181

655108

30

1427

300.4

33.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.081 ± 0.061

0.512 ± 0.013

6.035 ± 0.048

7.802 ± 0.07

4.56 ± 0.038

6.869 ± 0.054

2.076 ± 0.025

8.044 ± 0.058

6.312 ± 0.054

9.3 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.984 ± 0.024

4.868 ± 0.04

3.334 ± 0.028

2.956 ± 0.031

3.933 ± 0.045

5.972 ± 0.039

5.79 ± 0.028

7.074 ± 0.044

0.739 ± 0.014

3.76 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski