Amaricoccus sp. HAR-UPW-R2A-40

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Amaricoccus; unclassified Amaricoccus

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4378 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2M9PGT8|A0A2M9PGT8_9RHOB NAD(P)H dehydrogenase (quinone) OS=Amaricoccus sp. HAR-UPW-R2A-40 OX=1985299 GN=CNY89_00685 PE=3 SV=1
MM1 pKa = 7.94AYY3 pKa = 10.68LDD5 pKa = 4.08ANGVLLPTSRR15 pKa = 11.84VASSWIGGGGALYY28 pKa = 10.77GNSGDD33 pKa = 3.52NGFYY37 pKa = 10.92GSGDD41 pKa = 3.51DD42 pKa = 4.03TLTGGLGDD50 pKa = 3.99DD51 pKa = 4.65TYY53 pKa = 10.88MVWVPSTTIVEE64 pKa = 4.2AANGGVDD71 pKa = 3.58TLDD74 pKa = 3.31SRR76 pKa = 11.84VWGEE80 pKa = 4.11AILPEE85 pKa = 4.38HH86 pKa = 7.02VEE88 pKa = 3.97NLLLNGPGTTAGTGNGLRR106 pKa = 11.84NLIVAGNVGATLDD119 pKa = 4.01GLAGDD124 pKa = 4.69DD125 pKa = 4.02VLVSGAGADD134 pKa = 3.33IMRR137 pKa = 11.84VQAGNGSDD145 pKa = 3.87AIVGFVPGSDD155 pKa = 3.6VIQLVGYY162 pKa = 9.38GISTFDD168 pKa = 3.56QLAQIAAQQGSDD180 pKa = 3.87LVFTFSNDD188 pKa = 2.91EE189 pKa = 4.1KK190 pKa = 11.19LVLRR194 pKa = 11.84DD195 pKa = 3.7VVLSDD200 pKa = 4.06LDD202 pKa = 4.53GYY204 pKa = 11.41DD205 pKa = 3.77FGLDD209 pKa = 3.35QPLPPLPAGHH219 pKa = 6.28QSLFGPGQAYY229 pKa = 10.28SAFGWYY235 pKa = 9.48VLNNVWNPGPLVYY248 pKa = 10.5GVDD251 pKa = 3.89YY252 pKa = 9.83TVSSSYY258 pKa = 11.6DD259 pKa = 3.48PTDD262 pKa = 3.13LTAGVTFHH270 pKa = 6.89WAFPLTTNAFPTIIAYY286 pKa = 9.5PEE288 pKa = 4.61VIFGPAPMSGGHH300 pKa = 6.19KK301 pKa = 9.44VTDD304 pKa = 3.64TAGVFPLQVSEE315 pKa = 4.69IVDD318 pKa = 3.85LTADD322 pKa = 3.55YY323 pKa = 11.27AVAIEE328 pKa = 4.35GNTDD332 pKa = 3.36GFNVAFDD339 pKa = 3.06IWLTDD344 pKa = 3.44VPNGGPSSVTNEE356 pKa = 3.58VMVWVHH362 pKa = 6.17KK363 pKa = 11.05GGVTPYY369 pKa = 9.94GQLAGTYY376 pKa = 10.44DD377 pKa = 4.44DD378 pKa = 5.2GPVSAEE384 pKa = 4.02IYY386 pKa = 10.78VSDD389 pKa = 4.26SGDD392 pKa = 2.9WTYY395 pKa = 10.4TAVVLDD401 pKa = 3.87EE402 pKa = 4.85DD403 pKa = 4.28RR404 pKa = 11.84LVGEE408 pKa = 4.43ISVSGVLARR417 pKa = 11.84LQALGIVSSSEE428 pKa = 3.65YY429 pKa = 10.43LASLEE434 pKa = 4.18LGSEE438 pKa = 4.29IVSGAGSLTIEE449 pKa = 4.85DD450 pKa = 3.91LTLNATLEE458 pKa = 4.13DD459 pKa = 3.49RR460 pKa = 11.84TIEE463 pKa = 3.97VTGAGTTTHH472 pKa = 7.57LFPEE476 pKa = 4.99DD477 pKa = 4.07PPDD480 pKa = 3.6LSGDD484 pKa = 3.65DD485 pKa = 3.33RR486 pKa = 11.84VLYY489 pKa = 10.71DD490 pKa = 3.57PTQSLIEE497 pKa = 4.46GGEE500 pKa = 4.21GSDD503 pKa = 3.27TLVLNVGATVRR514 pKa = 11.84LDD516 pKa = 3.25RR517 pKa = 11.84FTTSQVDD524 pKa = 4.04GPAYY528 pKa = 9.22VTGFEE533 pKa = 4.43NVDD536 pKa = 3.05ASAANAGVTLYY547 pKa = 10.62GSPYY551 pKa = 10.87ANVLVGGAYY560 pKa = 9.28TDD562 pKa = 3.78TLSGGDD568 pKa = 3.51GADD571 pKa = 3.41VLRR574 pKa = 11.84GGGGGDD580 pKa = 4.01IIDD583 pKa = 4.56GGAGADD589 pKa = 3.68QIQGGDD595 pKa = 3.37GNDD598 pKa = 3.7RR599 pKa = 11.84ITYY602 pKa = 9.63DD603 pKa = 3.28AADD606 pKa = 3.63YY607 pKa = 11.18SIDD610 pKa = 3.56AGAGSDD616 pKa = 3.72TLVLTVGATVRR627 pKa = 11.84LDD629 pKa = 3.36RR630 pKa = 11.84FSTSQVDD637 pKa = 3.49GGAYY641 pKa = 7.88VTGFEE646 pKa = 4.7KK647 pKa = 10.71VDD649 pKa = 3.3AAAASAAVNLTGSAYY664 pKa = 10.56ANTLTGGSKK673 pKa = 9.99RR674 pKa = 11.84DD675 pKa = 3.68VLTGGAGADD684 pKa = 2.96QFVFKK689 pKa = 9.63TAPKK693 pKa = 10.31ASAADD698 pKa = 4.0TITDD702 pKa = 4.04FSVGEE707 pKa = 4.08DD708 pKa = 4.06RR709 pKa = 11.84IHH711 pKa = 7.34LDD713 pKa = 2.91ASFFRR718 pKa = 11.84GLPTGALASGALEE731 pKa = 4.39FGTTAAASDD740 pKa = 3.76DD741 pKa = 4.17RR742 pKa = 11.84ILYY745 pKa = 10.38DD746 pKa = 3.44SASGSLYY753 pKa = 10.37FDD755 pKa = 4.19RR756 pKa = 11.84DD757 pKa = 3.33GSADD761 pKa = 3.9DD762 pKa = 3.82YY763 pKa = 11.7SAILFATIGPGKK775 pKa = 10.13AVSAQDD781 pKa = 3.03FWVIAA786 pKa = 3.95

Molecular weight: 80.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2M9P8G0|A0A2M9P8G0_9RHOB Elongation factor Tu (Fragment) OS=Amaricoccus sp. HAR-UPW-R2A-40 OX=1985299 GN=tuf PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNLVRR13 pKa = 11.84ARR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.37GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.19AGRR29 pKa = 11.84VILNRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84AMGRR40 pKa = 11.84KK41 pKa = 9.03KK42 pKa = 10.63LSAA45 pKa = 3.93

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4378

0

4378

800038

21

1506

182.7

19.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.635 ± 0.057

0.882 ± 0.015

5.728 ± 0.035

5.864 ± 0.039

3.841 ± 0.031

8.822 ± 0.046

2.001 ± 0.022

4.865 ± 0.033

2.824 ± 0.032

9.91 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.565 ± 0.02

2.398 ± 0.025

5.445 ± 0.033

2.942 ± 0.023

7.759 ± 0.06

5.08 ± 0.031

5.255 ± 0.033

7.392 ± 0.038

1.532 ± 0.021

2.259 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski