Comamonas serinivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas

Average proteome isoelectric point is 6.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3699 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y0EP99|A0A1Y0EP99_9BURK Cytochrome C OS=Comamonas serinivorans OX=1082851 GN=CCO03_11000 PE=4 SV=1
MM1 pKa = 7.5QILFPNSFGHH11 pKa = 6.97PLPQEE16 pKa = 4.61DD17 pKa = 4.43EE18 pKa = 4.36VLDD21 pKa = 3.96LQEE24 pKa = 4.51QYY26 pKa = 11.54GFSQDD31 pKa = 3.25YY32 pKa = 11.43AEE34 pKa = 5.37FLFRR38 pKa = 11.84QNGFSFDD45 pKa = 3.79RR46 pKa = 11.84LADD49 pKa = 3.63ASDD52 pKa = 4.07PDD54 pKa = 3.25EE55 pKa = 4.54CLAVGEE61 pKa = 5.07DD62 pKa = 3.96DD63 pKa = 5.32AEE65 pKa = 4.48GNADD69 pKa = 4.02LRR71 pKa = 11.84HH72 pKa = 6.23LYY74 pKa = 10.77ALGAEE79 pKa = 4.5APFDD83 pKa = 4.09DD84 pKa = 6.22LNAQLEE90 pKa = 4.34DD91 pKa = 4.48FIFRR95 pKa = 11.84EE96 pKa = 4.09VLFPIGAGYY105 pKa = 9.87GGQVFVEE112 pKa = 4.32VLAGKK117 pKa = 9.25YY118 pKa = 8.81QGFIASLDD126 pKa = 3.7HH127 pKa = 6.86EE128 pKa = 5.27LYY130 pKa = 10.88ASNTSLEE137 pKa = 4.29EE138 pKa = 3.96YY139 pKa = 10.7LEE141 pKa = 4.16EE142 pKa = 6.17AEE144 pKa = 5.03LEE146 pKa = 4.19GSEE149 pKa = 4.3EE150 pKa = 4.64DD151 pKa = 4.25RR152 pKa = 11.84DD153 pKa = 3.98ALADD157 pKa = 3.82ALCDD161 pKa = 4.06PEE163 pKa = 6.44SGLAWFHH170 pKa = 6.25ARR172 pKa = 11.84SLRR175 pKa = 11.84QFLSEE180 pKa = 5.22CVFCDD185 pKa = 3.38EE186 pKa = 4.59SLTGFVMDD194 pKa = 5.92ADD196 pKa = 4.43DD197 pKa = 6.69LPDD200 pKa = 3.58EE201 pKa = 4.7LLNN204 pKa = 4.27

Molecular weight: 22.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y0ES83|A0A1Y0ES83_9BURK Probable GTP-binding protein EngB OS=Comamonas serinivorans OX=1082851 GN=engB PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.25QPSKK9 pKa = 7.79TRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.79GFLVRR21 pKa = 11.84MKK23 pKa = 9.7TRR25 pKa = 11.84GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3699

0

3699

1213414

34

2774

328.0

35.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.774 ± 0.06

0.926 ± 0.012

5.236 ± 0.03

4.745 ± 0.036

3.197 ± 0.024

8.409 ± 0.045

2.413 ± 0.023

3.752 ± 0.032

2.838 ± 0.037

10.861 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.364 ± 0.02

2.438 ± 0.024

5.718 ± 0.035

4.66 ± 0.029

6.823 ± 0.041

5.137 ± 0.031

5.295 ± 0.033

7.768 ± 0.035

1.625 ± 0.02

2.021 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski