Desulfurella amilsii

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfurellales; Desulfurellaceae; Desulfurella

Average proteome isoelectric point is 7.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2019 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1X4XUT4|A0A1X4XUT4_9DELT Uncharacterized protein OS=Desulfurella amilsii OX=1562698 GN=DESAMIL20_843 PE=4 SV=1
MM1 pKa = 7.09MRR3 pKa = 11.84SLWSGVSGLQTSQDD17 pKa = 3.36FMDD20 pKa = 3.58VVGNNVANVNTVGYY34 pKa = 9.38KK35 pKa = 10.15ASQINFSDD43 pKa = 3.73VLAQTLSGATGPQGALGGMNPMQIGLGTQVASTSKK78 pKa = 10.5NFSQGSLQTTNVTTNLAIQGNGFFIVSPDD107 pKa = 3.18NGNTYY112 pKa = 10.66SYY114 pKa = 10.64TRR116 pKa = 11.84AGDD119 pKa = 3.42FTFDD123 pKa = 3.24AKK125 pKa = 11.34GNLVTPTGDD134 pKa = 3.55VVQGWLANNTTHH146 pKa = 8.07LINTASTIQGINIPQNMTVPAGVTKK171 pKa = 10.4NVSMSGNLDD180 pKa = 3.36GGQTVQTSEE189 pKa = 4.13LTAITPSLEE198 pKa = 4.01NSTGAINMNSIYY210 pKa = 10.61NSNGNLIGVGQTTATAAVGAGSDD233 pKa = 4.03TVSGLYY239 pKa = 10.12DD240 pKa = 3.25INGNQIGSNWTVTVGGTTLTPTPATLSDD268 pKa = 4.26LANALAPSGTTATITPGGEE287 pKa = 3.81IQISSTGGTTLPTITSSNPVLNGILSNLSGKK318 pKa = 7.85TIPAGGTITSLPFFSTPGDD337 pKa = 3.68TVAMSFDD344 pKa = 3.1GGANYY349 pKa = 7.76NTYY352 pKa = 10.15IYY354 pKa = 10.95GSGTGGGGTRR364 pKa = 11.84NSTTGIMSGNVQYY377 pKa = 8.36FTTLDD382 pKa = 3.77DD383 pKa = 4.55LKK385 pKa = 11.43SDD387 pKa = 3.37INTDD391 pKa = 3.13INDD394 pKa = 3.68NSATPPINNATVTLNSSGEE413 pKa = 4.06MQIVPTTGSNLSSIGPVYY431 pKa = 10.99SNNSNLATILGTLSGQVQQTGSTSQPFMADD461 pKa = 3.04TYY463 pKa = 8.33STSVAVYY470 pKa = 10.08DD471 pKa = 4.21SLGNKK476 pKa = 9.59HH477 pKa = 6.86DD478 pKa = 3.63VTFNFAKK485 pKa = 10.13TNYY488 pKa = 9.58NPSTNHH494 pKa = 5.71TQWEE498 pKa = 4.95WYY500 pKa = 7.91ATAPSSGSSTPTLTNASGQITFDD523 pKa = 3.45STGKK527 pKa = 10.48LVGLTPPLAITANWNNGTSQQVVNLHH553 pKa = 6.42FGDD556 pKa = 4.73LNTFDD561 pKa = 5.51GLTQFSLPSQTSSLTQDD578 pKa = 3.54GYY580 pKa = 11.89AGGSLQNIIVNQNGVISGMFSNGKK604 pKa = 9.72SYY606 pKa = 11.6ALGQVSLATFNNNDD620 pKa = 3.31GLLSEE625 pKa = 4.74GNSLFEE631 pKa = 4.01ATANSGTPIVTTAGTGTAGTVIPSEE656 pKa = 4.24LEE658 pKa = 3.75EE659 pKa = 4.93SNVDD663 pKa = 3.88LGTEE667 pKa = 4.4FTNMIIAEE675 pKa = 4.11RR676 pKa = 11.84AYY678 pKa = 10.04QANARR683 pKa = 11.84TLSTSDD689 pKa = 3.18TMLQSLLNIQQ699 pKa = 3.52

Molecular weight: 71.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1X4XXY5|A0A1X4XXY5_9DELT Z1 domain-containing protein OS=Desulfurella amilsii OX=1562698 GN=DESAMIL20_1953 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 9.6RR3 pKa = 11.84TFQPHH8 pKa = 4.18NTPRR12 pKa = 11.84KK13 pKa = 7.34RR14 pKa = 11.84THH16 pKa = 6.22GFRR19 pKa = 11.84TRR21 pKa = 11.84MKK23 pKa = 8.83TANGRR28 pKa = 11.84QVLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.98GRR39 pKa = 11.84KK40 pKa = 8.8RR41 pKa = 11.84LAII44 pKa = 4.0

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2019

0

2019

603201

37

1518

298.8

33.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.536 ± 0.045

1.071 ± 0.023

5.13 ± 0.04

6.04 ± 0.064

5.371 ± 0.057

5.905 ± 0.05

1.519 ± 0.02

9.505 ± 0.055

9.021 ± 0.06

9.813 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.116 ± 0.02

6.038 ± 0.054

3.295 ± 0.031

3.202 ± 0.039

3.015 ± 0.032

6.534 ± 0.047

4.769 ± 0.043

6.248 ± 0.036

0.698 ± 0.016

4.173 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski