Salinarimonas sp. BN140002

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Salinarimonadaceae; Salinarimonas; unclassified Salinarimonas

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5046 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B2VVA8|A0A5B2VVA8_9RHIZ Uncharacterized protein OS=Salinarimonas sp. BN140002 OX=1638099 GN=F0L46_02905 PE=4 SV=1
MM1 pKa = 7.47QIGANQQNIDD11 pKa = 3.52TSQWASLDD19 pKa = 3.5GKK21 pKa = 10.82AGLSFNDD28 pKa = 3.47ILMGMLQLLQSGQRR42 pKa = 11.84VGEE45 pKa = 4.2GAGGGAAGEE54 pKa = 4.22AGGCGAAGSATGCGGAGGAGGIGDD78 pKa = 4.53AGATNACGGANGSDD92 pKa = 3.44NGILMPSQAGGAGAVGSSGSCGGMDD117 pKa = 3.4GGYY120 pKa = 10.78DD121 pKa = 3.69FGSDD125 pKa = 3.41SLDD128 pKa = 3.36AAGGCGSSSGVGEE141 pKa = 4.03AGGCGEE147 pKa = 4.31VGATGSDD154 pKa = 3.11VDD156 pKa = 4.08GASGAGEE163 pKa = 4.37GCPRR167 pKa = 11.84CCGPQCSCNGNASRR181 pKa = 11.84NGVSVFRR188 pKa = 11.84GNKK191 pKa = 8.73LQQ193 pKa = 3.54

Molecular weight: 17.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B2UZ78|A0A5B2UZ78_9RHIZ Uncharacterized protein OS=Salinarimonas sp. BN140002 OX=1638099 GN=F0L46_25280 PE=4 SV=1
GG1 pKa = 6.88GRR3 pKa = 11.84GAGGGGGSPRR13 pKa = 11.84VPPLAPRR20 pKa = 11.84PPAPPPPPRR29 pKa = 11.84RR30 pKa = 11.84GGRR33 pKa = 11.84PPPPVAPPPRR43 pKa = 11.84GPRR46 pKa = 11.84SRR48 pKa = 11.84GGGGLGRR55 pKa = 11.84PPLAPARR62 pKa = 11.84RR63 pKa = 11.84GAPPPP68 pKa = 3.77

Molecular weight: 6.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5046

0

5046

1511247

30

2108

299.5

32.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.867 ± 0.054

0.778 ± 0.011

5.467 ± 0.028

5.787 ± 0.031

3.393 ± 0.022

9.191 ± 0.035

1.929 ± 0.017

4.404 ± 0.024

2.383 ± 0.027

10.443 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.219 ± 0.014

2.066 ± 0.02

5.858 ± 0.028

2.681 ± 0.021

8.493 ± 0.038

4.728 ± 0.02

5.115 ± 0.023

7.953 ± 0.032

1.275 ± 0.014

1.969 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski