Candidatus Mcinerneyibacterium aminivorans

Taxonomy: cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Mcinerneyibacteriota; Candidatus Mcinerneyibacteria; Candidatus Mcinerneyibacteriales; Candidatus Mcinerneyibacteriaceae; Candidatus Mcinerneyibacterium

Average proteome isoelectric point is 7.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2016 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5D0MKI0|A0A5D0MKI0_9BACT TIGR00282 family metallophosphoesterase OS=Candidatus Mcinerneyibacterium aminivorans OX=2703815 GN=FXF47_00975 PE=4 SV=1
MM1 pKa = 7.73AEE3 pKa = 4.86CPLLDD8 pKa = 3.05QCKK11 pKa = 9.79FYY13 pKa = 11.3EE14 pKa = 4.54KK15 pKa = 10.63YY16 pKa = 10.81QNIDD20 pKa = 3.47DD21 pKa = 4.06KK22 pKa = 11.28TLLEE26 pKa = 4.28GFVNRR31 pKa = 11.84FCNGNFEE38 pKa = 4.2QCVVKK43 pKa = 10.78KK44 pKa = 9.46ITEE47 pKa = 4.18DD48 pKa = 3.18HH49 pKa = 6.39NMDD52 pKa = 3.88YY53 pKa = 11.21VPDD56 pKa = 3.78NMLPDD61 pKa = 4.19GMPEE65 pKa = 4.17PGTDD69 pKa = 3.34DD70 pKa = 4.76SEE72 pKa = 4.19WSEE75 pKa = 5.53DD76 pKa = 3.45IIDD79 pKa = 3.69YY80 pKa = 8.55MM81 pKa = 5.14

Molecular weight: 9.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5D0MGJ7|A0A5D0MGJ7_9BACT Uncharacterized protein OS=Candidatus Mcinerneyibacterium aminivorans OX=2703815 GN=FXF47_08475 PE=4 SV=1
MM1 pKa = 7.54SSVKK5 pKa = 10.23KK6 pKa = 10.28KK7 pKa = 10.23RR8 pKa = 11.84KK9 pKa = 9.79KK10 pKa = 10.52KK11 pKa = 8.69MNKK14 pKa = 8.81HH15 pKa = 4.84KK16 pKa = 10.35RR17 pKa = 11.84KK18 pKa = 9.58KK19 pKa = 8.92RR20 pKa = 11.84SRR22 pKa = 11.84KK23 pKa = 8.93NRR25 pKa = 11.84HH26 pKa = 5.12KK27 pKa = 10.59KK28 pKa = 9.46KK29 pKa = 10.48KK30 pKa = 9.44RR31 pKa = 3.32

Molecular weight: 4.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2016

0

2016

637312

16

2339

316.1

36.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.445 ± 0.057

0.723 ± 0.018

5.612 ± 0.045

7.488 ± 0.072

5.243 ± 0.054

5.628 ± 0.06

1.425 ± 0.019

10.093 ± 0.056

11.282 ± 0.085

9.049 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.273 ± 0.026

7.031 ± 0.069

2.72 ± 0.03

2.23 ± 0.022

3.627 ± 0.031

5.89 ± 0.044

4.058 ± 0.03

5.518 ± 0.052

0.745 ± 0.016

4.921 ± 0.059
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski