Mycolicibacterium vanbaalenii (Mycobacterium vanbaalenii)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Mycobacteriaceae;

Average proteome isoelectric point is 5.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6378 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5S9MZ60|A0A5S9MZ60_MYCVN Uric acid degradation bifunctional protein OS=Mycolicibacterium vanbaalenii OX=110539 GN=uao_2 PE=4 SV=1
MM1 pKa = 7.53RR2 pKa = 11.84VFAASLILATPFALSACGSNDD23 pKa = 2.77EE24 pKa = 4.28TAAPSGTSPAADD36 pKa = 3.98GEE38 pKa = 4.81CPATPVDD45 pKa = 3.81VVVSVDD51 pKa = 3.04QWGDD55 pKa = 3.03IVSQLGGACANVTTVLASSSVDD77 pKa = 3.12PHH79 pKa = 8.5DD80 pKa = 4.55YY81 pKa = 11.01EE82 pKa = 4.77PAPSDD87 pKa = 3.18AALFDD92 pKa = 3.88GAQLVVINGGHH103 pKa = 5.48YY104 pKa = 10.46DD105 pKa = 3.18EE106 pKa = 5.19WAAKK110 pKa = 9.31LAAASAPDD118 pKa = 3.82APIVNAVEE126 pKa = 4.35SSGGHH131 pKa = 6.1ADD133 pKa = 3.99EE134 pKa = 5.92AGHH137 pKa = 6.64DD138 pKa = 3.95HH139 pKa = 7.85DD140 pKa = 6.06GGEE143 pKa = 4.3ADD145 pKa = 4.44HH146 pKa = 7.37DD147 pKa = 3.54QDD149 pKa = 3.81QDD151 pKa = 3.39HH152 pKa = 7.19DD153 pKa = 4.28HH154 pKa = 7.13DD155 pKa = 4.65HH156 pKa = 7.09ADD158 pKa = 3.79EE159 pKa = 5.29AGHH162 pKa = 6.48DD163 pKa = 3.83HH164 pKa = 7.05AGEE167 pKa = 4.54GNPHH171 pKa = 4.99VWYY174 pKa = 10.09SPSVVTSVAEE184 pKa = 3.97AVTGEE189 pKa = 4.12LSEE192 pKa = 4.68LAPDD196 pKa = 3.33AAGYY200 pKa = 10.26FDD202 pKa = 4.06EE203 pKa = 4.89RR204 pKa = 11.84HH205 pKa = 4.92TAFEE209 pKa = 4.31NVMTPYY215 pKa = 10.41YY216 pKa = 9.86DD217 pKa = 3.74TIAAIKK223 pKa = 9.65ADD225 pKa = 3.77SVGKK229 pKa = 10.46SFAATEE235 pKa = 4.4SVFDD239 pKa = 4.97DD240 pKa = 3.32MGAALGLQNRR250 pKa = 11.84TPEE253 pKa = 4.79GYY255 pKa = 10.07QLASSNEE262 pKa = 4.01AEE264 pKa = 4.63PAPADD269 pKa = 3.42LDD271 pKa = 3.66AFLRR275 pKa = 11.84LLGDD279 pKa = 3.36RR280 pKa = 11.84GVDD283 pKa = 3.18VLIYY287 pKa = 8.68NTQTEE292 pKa = 4.55GSVPEE297 pKa = 4.21QIRR300 pKa = 11.84AAAEE304 pKa = 3.8QAGVPVVEE312 pKa = 4.67VTEE315 pKa = 4.27TVPPNTEE322 pKa = 4.42SFQTWQVAQLDD333 pKa = 4.29SLAEE337 pKa = 3.94ALGVPVV343 pKa = 4.15

Molecular weight: 35.49 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5S9PXT8|A0A5S9PXT8_MYCVN Uncharacterized protein OS=Mycolicibacterium vanbaalenii OX=110539 GN=AELLOGFF_00726 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.72HH17 pKa = 5.63RR18 pKa = 11.84KK19 pKa = 7.56LLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6378

0

6378

2015758

29

3732

316.0

33.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.849 ± 0.04

0.825 ± 0.01

6.447 ± 0.026

5.383 ± 0.028

3.059 ± 0.019

8.851 ± 0.03

2.184 ± 0.016

4.202 ± 0.019

2.072 ± 0.019

9.738 ± 0.031

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.12 ± 0.013

2.202 ± 0.013

5.795 ± 0.024

3.013 ± 0.017

7.21 ± 0.028

5.55 ± 0.021

6.12 ± 0.024

8.769 ± 0.027

1.514 ± 0.013

2.092 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski