Amino acid dipepetide frequency for Cherry chlorotic rusty spot associated partitivirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
0.89AlaAla: 0.89 ± 0.697
0.0AlaCys: 0.0 ± 0.0
3.559AlaAsp: 3.559 ± 1.0
2.669AlaGlu: 2.669 ± 0.829
0.89AlaPhe: 0.89 ± 0.566
4.448AlaGly: 4.448 ± 0.303
3.559AlaHis: 3.559 ± 1.0
3.559AlaIle: 3.559 ± 1.0
2.669AlaLys: 2.669 ± 0.434
2.669AlaLeu: 2.669 ± 0.434
4.448AlaMet: 4.448 ± 1.566
7.117AlaAsn: 7.117 ± 0.526
8.007AlaPro: 8.007 ± 3.749
2.669AlaGln: 2.669 ± 0.434
2.669AlaArg: 2.669 ± 0.829
4.448AlaSer: 4.448 ± 2.223
7.117AlaThr: 7.117 ± 1.789
3.559AlaVal: 3.559 ± 1.526
0.0AlaTrp: 0.0 ± 0.0
2.669AlaTyr: 2.669 ± 1.697
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.89CysGlu: 0.89 ± 0.566
0.0CysPhe: 0.0 ± 0.0
0.0CysGly: 0.0 ± 0.0
0.89CysHis: 0.89 ± 0.566
1.779CysIle: 1.779 ± 1.131
0.0CysLys: 0.0 ± 0.0
0.89CysLeu: 0.89 ± 0.566
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.0CysArg: 0.0 ± 0.0
0.89CysSer: 0.89 ± 0.566
0.89CysThr: 0.89 ± 0.697
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.559AspAla: 3.559 ± 1.0
0.0AspCys: 0.0 ± 0.0
3.559AspAsp: 3.559 ± 1.0
3.559AspGlu: 3.559 ± 0.263
6.228AspPhe: 6.228 ± 0.171
1.779AspGly: 1.779 ± 0.131
2.669AspHis: 2.669 ± 1.697
2.669AspIle: 2.669 ± 0.829
2.669AspLys: 2.669 ± 0.434
3.559AspLeu: 3.559 ± 1.526
0.0AspMet: 0.0 ± 0.0
2.669AspAsn: 2.669 ± 1.697
1.779AspPro: 1.779 ± 1.131
2.669AspGln: 2.669 ± 2.091
0.89AspArg: 0.89 ± 0.697
5.338AspSer: 5.338 ± 0.869
8.897AspThr: 8.897 ± 3.183
3.559AspVal: 3.559 ± 1.526
4.448AspTrp: 4.448 ± 0.303
3.559AspTyr: 3.559 ± 1.0
0.0AspXaa: 0.0 ± 0.0
Glu
1.779GluAla: 1.779 ± 0.131
0.0GluCys: 0.0 ± 0.0
1.779GluAsp: 1.779 ± 0.131
1.779GluGlu: 1.779 ± 0.131
1.779GluPhe: 1.779 ± 1.394
0.0GluGly: 0.0 ± 0.0
1.779GluHis: 1.779 ± 0.131
2.669GluIle: 2.669 ± 1.697
0.89GluLys: 0.89 ± 0.566
4.448GluLeu: 4.448 ± 1.566
0.89GluMet: 0.89 ± 0.462
1.779GluAsn: 1.779 ± 0.131
2.669GluPro: 2.669 ± 0.434
1.779GluGln: 1.779 ± 1.394
2.669GluArg: 2.669 ± 1.697
0.89GluSer: 0.89 ± 0.566
3.559GluThr: 3.559 ± 2.263
1.779GluVal: 1.779 ± 1.131
0.0GluTrp: 0.0 ± 0.0
1.779GluTyr: 1.779 ± 1.131
0.0GluXaa: 0.0 ± 0.0
Phe
6.228PheAla: 6.228 ± 1.092
0.89PheCys: 0.89 ± 0.566
5.338PheAsp: 5.338 ± 3.394
3.559PheGlu: 3.559 ± 1.0
3.559PhePhe: 3.559 ± 1.526
7.117PheGly: 7.117 ± 1.789
0.0PheHis: 0.0 ± 0.0
1.779PheIle: 1.779 ± 0.131
2.669PheLys: 2.669 ± 0.829
6.228PheLeu: 6.228 ± 1.434
1.779PheMet: 1.779 ± 0.131
0.0PheAsn: 0.0 ± 0.0
1.779PhePro: 1.779 ± 1.131
2.669PheGln: 2.669 ± 0.829
2.669PheArg: 2.669 ± 0.434
3.559PheSer: 3.559 ± 1.0
3.559PheThr: 3.559 ± 0.263
3.559PheVal: 3.559 ± 0.263
0.0PheTrp: 0.0 ± 0.0
2.669PheTyr: 2.669 ± 0.829
0.0PheXaa: 0.0 ± 0.0
Gly
1.779GlyAla: 1.779 ± 0.131
1.779GlyCys: 1.779 ± 1.131
1.779GlyAsp: 1.779 ± 0.131
0.0GlyGlu: 0.0 ± 0.0
2.669GlyPhe: 2.669 ± 0.434
2.669GlyGly: 2.669 ± 0.829
0.89GlyHis: 0.89 ± 0.566
7.117GlyIle: 7.117 ± 3.052
0.0GlyLys: 0.0 ± 0.0
7.117GlyLeu: 7.117 ± 0.737
0.89GlyMet: 0.89 ± 0.697
3.559GlyAsn: 3.559 ± 1.0
7.117GlyPro: 7.117 ± 4.314
0.0GlyGln: 0.0 ± 0.0
1.779GlyArg: 1.779 ± 0.131
2.669GlySer: 2.669 ± 2.091
0.89GlyThr: 0.89 ± 0.697
1.779GlyVal: 1.779 ± 0.131
1.779GlyTrp: 1.779 ± 0.131
2.669GlyTyr: 2.669 ± 0.434
0.0GlyXaa: 0.0 ± 0.0
His
4.448HisAla: 4.448 ± 0.303
0.0HisCys: 0.0 ± 0.0
2.669HisAsp: 2.669 ± 0.434
1.779HisGlu: 1.779 ± 1.131
2.669HisPhe: 2.669 ± 1.697
1.779HisGly: 1.779 ± 0.131
1.779HisHis: 1.779 ± 1.131
1.779HisIle: 1.779 ± 0.131
1.779HisLys: 1.779 ± 1.131
3.559HisLeu: 3.559 ± 0.263
0.89HisMet: 0.89 ± 0.566
0.89HisAsn: 0.89 ± 0.697
0.89HisPro: 0.89 ± 0.697
0.89HisGln: 0.89 ± 0.566
4.448HisArg: 4.448 ± 2.829
1.779HisSer: 1.779 ± 1.131
4.448HisThr: 4.448 ± 0.96
2.669HisVal: 2.669 ± 0.434
0.0HisTrp: 0.0 ± 0.0
1.779HisTyr: 1.779 ± 1.131
0.0HisXaa: 0.0 ± 0.0
Ile
3.559IleAla: 3.559 ± 1.526
0.0IleCys: 0.0 ± 0.0
2.669IleAsp: 2.669 ± 1.697
0.0IleGlu: 0.0 ± 0.0
5.338IlePhe: 5.338 ± 1.657
1.779IleGly: 1.779 ± 0.131
0.89IleHis: 0.89 ± 0.697
3.559IleIle: 3.559 ± 2.263
4.448IleLys: 4.448 ± 1.566
5.338IleLeu: 5.338 ± 1.657
0.89IleMet: 0.89 ± 0.697
1.779IleAsn: 1.779 ± 0.131
6.228IlePro: 6.228 ± 1.092
0.0IleGln: 0.0 ± 0.0
3.559IleArg: 3.559 ± 0.263
5.338IleSer: 5.338 ± 4.183
6.228IleThr: 6.228 ± 1.434
1.779IleVal: 1.779 ± 1.131
0.89IleTrp: 0.89 ± 0.566
2.669IleTyr: 2.669 ± 1.697
0.0IleXaa: 0.0 ± 0.0
Lys
2.669LysAla: 2.669 ± 0.434
0.89LysCys: 0.89 ± 0.566
5.338LysAsp: 5.338 ± 0.394
1.779LysGlu: 1.779 ± 1.131
0.89LysPhe: 0.89 ± 0.566
0.0LysGly: 0.0 ± 0.0
2.669LysHis: 2.669 ± 0.434
2.669LysIle: 2.669 ± 0.434
2.669LysLys: 2.669 ± 0.434
0.89LysLeu: 0.89 ± 0.566
1.779LysMet: 1.779 ± 1.131
3.559LysAsn: 3.559 ± 1.526
0.89LysPro: 0.89 ± 0.566
1.779LysGln: 1.779 ± 1.394
2.669LysArg: 2.669 ± 0.434
3.559LysSer: 3.559 ± 1.0
2.669LysThr: 2.669 ± 1.697
4.448LysVal: 4.448 ± 0.96
0.89LysTrp: 0.89 ± 0.566
2.669LysTyr: 2.669 ± 0.829
0.0LysXaa: 0.0 ± 0.0
Leu
7.117LeuAla: 7.117 ± 3.263
0.0LeuCys: 0.0 ± 0.0
8.897LeuAsp: 8.897 ± 0.657
1.779LeuGlu: 1.779 ± 1.131
7.117LeuPhe: 7.117 ± 0.737
0.89LeuGly: 0.89 ± 0.697
2.669LeuHis: 2.669 ± 0.434
4.448LeuIle: 4.448 ± 0.96
1.779LeuLys: 1.779 ± 1.394
2.669LeuLeu: 2.669 ± 0.829
0.89LeuMet: 0.89 ± 0.566
4.448LeuAsn: 4.448 ± 0.303
7.117LeuPro: 7.117 ± 0.737
1.779LeuGln: 1.779 ± 1.131
4.448LeuArg: 4.448 ± 0.303
9.786LeuSer: 9.786 ± 1.171
4.448LeuThr: 4.448 ± 0.303
4.448LeuVal: 4.448 ± 0.96
2.669LeuTrp: 2.669 ± 0.434
3.559LeuTyr: 3.559 ± 1.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.779MetAla: 1.779 ± 0.131
0.0MetCys: 0.0 ± 0.0
1.779MetAsp: 1.779 ± 0.131
0.0MetGlu: 0.0 ± 0.0
0.89MetPhe: 0.89 ± 0.566
0.89MetGly: 0.89 ± 0.566
0.89MetHis: 0.89 ± 0.566
1.779MetIle: 1.779 ± 0.131
0.89MetLys: 0.89 ± 0.566
7.117MetLeu: 7.117 ± 2.0
0.89MetMet: 0.89 ± 0.697
0.89MetAsn: 0.89 ± 0.566
0.0MetPro: 0.0 ± 0.0
0.89MetGln: 0.89 ± 0.697
2.669MetArg: 2.669 ± 0.434
0.89MetSer: 0.89 ± 0.697
0.0MetThr: 0.0 ± 0.0
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.89MetTyr: 0.89 ± 0.566
0.0MetXaa: 0.0 ± 0.0
Asn
4.448AsnAla: 4.448 ± 0.96
0.0AsnCys: 0.0 ± 0.0
4.448AsnAsp: 4.448 ± 0.96
2.669AsnGlu: 2.669 ± 0.434
2.669AsnPhe: 2.669 ± 0.434
3.559AsnGly: 3.559 ± 1.0
2.669AsnHis: 2.669 ± 1.697
0.89AsnIle: 0.89 ± 0.697
4.448AsnLys: 4.448 ± 0.303
2.669AsnLeu: 2.669 ± 0.434
0.0AsnMet: 0.0 ± 0.0
1.779AsnAsn: 1.779 ± 1.131
2.669AsnPro: 2.669 ± 0.829
1.779AsnGln: 1.779 ± 0.131
2.669AsnArg: 2.669 ± 1.697
3.559AsnSer: 3.559 ± 0.263
1.779AsnThr: 1.779 ± 1.394
4.448AsnVal: 4.448 ± 0.303
0.0AsnTrp: 0.0 ± 0.0
1.779AsnTyr: 1.779 ± 1.131
0.0AsnXaa: 0.0 ± 0.0
Pro
7.117ProAla: 7.117 ± 3.052
0.89ProCys: 0.89 ± 0.566
6.228ProAsp: 6.228 ± 1.092
1.779ProGlu: 1.779 ± 0.131
3.559ProPhe: 3.559 ± 1.526
2.669ProGly: 2.669 ± 0.829
2.669ProHis: 2.669 ± 1.697
2.669ProIle: 2.669 ± 0.829
1.779ProLys: 1.779 ± 0.131
2.669ProLeu: 2.669 ± 0.434
2.669ProMet: 2.669 ± 1.697
5.338ProAsn: 5.338 ± 0.394
3.559ProPro: 3.559 ± 1.0
0.89ProGln: 0.89 ± 0.566
1.779ProArg: 1.779 ± 0.131
3.559ProSer: 3.559 ± 0.263
4.448ProThr: 4.448 ± 0.303
2.669ProVal: 2.669 ± 0.829
0.89ProTrp: 0.89 ± 0.566
4.448ProTyr: 4.448 ± 0.96
0.0ProXaa: 0.0 ± 0.0
Gln
1.779GlnAla: 1.779 ± 1.394
0.0GlnCys: 0.0 ± 0.0
0.89GlnAsp: 0.89 ± 0.697
0.89GlnGlu: 0.89 ± 0.566
3.559GlnPhe: 3.559 ± 0.263
2.669GlnGly: 2.669 ± 1.697
0.89GlnHis: 0.89 ± 0.566
0.0GlnIle: 0.0 ± 0.0
1.779GlnLys: 1.779 ± 0.131
4.448GlnLeu: 4.448 ± 0.96
1.779GlnMet: 1.779 ± 0.131
1.779GlnAsn: 1.779 ± 0.131
1.779GlnPro: 1.779 ± 0.131
0.0GlnGln: 0.0 ± 0.0
0.89GlnArg: 0.89 ± 0.697
2.669GlnSer: 2.669 ± 0.434
3.559GlnThr: 3.559 ± 2.789
3.559GlnVal: 3.559 ± 1.526
0.0GlnTrp: 0.0 ± 0.0
1.779GlnTyr: 1.779 ± 1.394
0.0GlnXaa: 0.0 ± 0.0
Arg
2.669ArgAla: 2.669 ± 1.697
0.0ArgCys: 0.0 ± 0.0
0.89ArgAsp: 0.89 ± 0.566
1.779ArgGlu: 1.779 ± 0.131
3.559ArgPhe: 3.559 ± 1.526
1.779ArgGly: 1.779 ± 0.131
2.669ArgHis: 2.669 ± 1.697
0.89ArgIle: 0.89 ± 0.566
0.89ArgLys: 0.89 ± 0.697
6.228ArgLeu: 6.228 ± 1.434
0.0ArgMet: 0.0 ± 0.0
3.559ArgAsn: 3.559 ± 1.0
3.559ArgPro: 3.559 ± 1.0
0.89ArgGln: 0.89 ± 0.566
1.779ArgArg: 1.779 ± 1.131
3.559ArgSer: 3.559 ± 1.0
5.338ArgThr: 5.338 ± 0.394
1.779ArgVal: 1.779 ± 0.131
0.89ArgTrp: 0.89 ± 0.566
3.559ArgTyr: 3.559 ± 0.263
0.0ArgXaa: 0.0 ± 0.0
Ser
5.338SerAla: 5.338 ± 0.394
1.779SerCys: 1.779 ± 0.131
3.559SerAsp: 3.559 ± 2.789
0.89SerGlu: 0.89 ± 0.566
2.669SerPhe: 2.669 ± 0.434
6.228SerGly: 6.228 ± 3.617
0.89SerHis: 0.89 ± 0.697
3.559SerIle: 3.559 ± 0.263
2.669SerLys: 2.669 ± 0.434
6.228SerLeu: 6.228 ± 0.171
0.89SerMet: 0.89 ± 0.697
4.448SerAsn: 4.448 ± 0.96
2.669SerPro: 2.669 ± 0.434
2.669SerGln: 2.669 ± 2.091
0.89SerArg: 0.89 ± 0.566
1.779SerSer: 1.779 ± 0.131
7.117SerThr: 7.117 ± 1.789
5.338SerVal: 5.338 ± 0.394
1.779SerTrp: 1.779 ± 1.131
7.117SerTyr: 7.117 ± 0.737
0.0SerXaa: 0.0 ± 0.0
Thr
5.338ThrAla: 5.338 ± 1.657
0.0ThrCys: 0.0 ± 0.0
8.007ThrAsp: 8.007 ± 1.223
3.559ThrGlu: 3.559 ± 1.526
2.669ThrPhe: 2.669 ± 1.697
5.338ThrGly: 5.338 ± 2.92
3.559ThrHis: 3.559 ± 0.263
5.338ThrIle: 5.338 ± 1.657
8.007ThrLys: 8.007 ± 1.303
4.448ThrLeu: 4.448 ± 0.303
2.669ThrMet: 2.669 ± 2.004
1.779ThrAsn: 1.779 ± 1.131
4.448ThrPro: 4.448 ± 0.303
6.228ThrGln: 6.228 ± 1.092
2.669ThrArg: 2.669 ± 0.829
7.117ThrSer: 7.117 ± 4.314
8.007ThrThr: 8.007 ± 6.274
4.448ThrVal: 4.448 ± 0.96
1.779ThrTrp: 1.779 ± 1.131
0.0ThrTyr: 0.0 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
3.559ValAla: 3.559 ± 0.263
0.0ValCys: 0.0 ± 0.0
1.779ValAsp: 1.779 ± 1.394
2.669ValGlu: 2.669 ± 1.697
4.448ValPhe: 4.448 ± 0.303
2.669ValGly: 2.669 ± 0.829
1.779ValHis: 1.779 ± 1.394
4.448ValIle: 4.448 ± 0.96
1.779ValLys: 1.779 ± 0.131
6.228ValLeu: 6.228 ± 0.171
0.89ValMet: 0.89 ± 0.697
2.669ValAsn: 2.669 ± 0.434
3.559ValPro: 3.559 ± 1.526
3.559ValGln: 3.559 ± 1.0
4.448ValArg: 4.448 ± 1.566
5.338ValSer: 5.338 ± 2.92
4.448ValThr: 4.448 ± 2.223
1.779ValVal: 1.779 ± 0.131
0.89ValTrp: 0.89 ± 0.697
0.89ValTyr: 0.89 ± 0.697
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.89TrpGlu: 0.89 ± 0.566
0.89TrpPhe: 0.89 ± 0.697
0.89TrpGly: 0.89 ± 0.566
2.669TrpHis: 2.669 ± 0.434
0.89TrpIle: 0.89 ± 0.566
0.89TrpLys: 0.89 ± 0.566
0.89TrpLeu: 0.89 ± 0.566
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.89TrpPro: 0.89 ± 0.566
1.779TrpGln: 1.779 ± 0.131
0.89TrpArg: 0.89 ± 0.697
0.89TrpSer: 0.89 ± 0.566
3.559TrpThr: 3.559 ± 1.0
0.0TrpVal: 0.0 ± 0.0
0.89TrpTrp: 0.89 ± 0.566
0.89TrpTyr: 0.89 ± 0.566
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.559TyrAla: 3.559 ± 1.0
0.0TyrCys: 0.0 ± 0.0
0.89TyrAsp: 0.89 ± 0.566
1.779TyrGlu: 1.779 ± 1.131
3.559TyrPhe: 3.559 ± 2.263
1.779TyrGly: 1.779 ± 0.131
4.448TyrHis: 4.448 ± 0.303
4.448TyrIle: 4.448 ± 0.303
2.669TyrLys: 2.669 ± 0.434
2.669TyrLeu: 2.669 ± 0.434
0.0TyrMet: 0.0 ± 0.0
0.89TyrAsn: 0.89 ± 0.566
2.669TyrPro: 2.669 ± 1.697
1.779TyrGln: 1.779 ± 1.394
1.779TyrArg: 1.779 ± 1.131
0.89TyrSer: 0.89 ± 0.697
5.338TyrThr: 5.338 ± 0.869
6.228TyrVal: 6.228 ± 2.354
0.0TyrTrp: 0.0 ± 0.0
4.448TyrTyr: 4.448 ± 0.303
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1125 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski