Amino acid dipepetide frequency for Turkey adenovirus 3

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
2.99AlaAla: 2.99 ± 0.93
0.598AlaCys: 0.598 ± 0.276
2.512AlaAsp: 2.512 ± 0.539
2.153AlaGlu: 2.153 ± 0.481
2.392AlaPhe: 2.392 ± 0.528
2.631AlaGly: 2.631 ± 0.625
0.359AlaHis: 0.359 ± 0.223
4.186AlaIle: 4.186 ± 0.653
3.229AlaLys: 3.229 ± 0.815
4.665AlaLeu: 4.665 ± 0.723
1.076AlaMet: 1.076 ± 0.374
2.512AlaAsn: 2.512 ± 0.676
2.99AlaPro: 2.99 ± 0.547
1.674AlaGln: 1.674 ± 0.28
1.316AlaArg: 1.316 ± 0.449
2.99AlaSer: 2.99 ± 0.599
3.708AlaThr: 3.708 ± 0.784
3.468AlaVal: 3.468 ± 0.656
0.478AlaTrp: 0.478 ± 0.263
2.392AlaTyr: 2.392 ± 0.511
0.0AlaXaa: 0.0 ± 0.0
Cys
0.837CysAla: 0.837 ± 0.298
0.478CysCys: 0.478 ± 0.244
0.837CysAsp: 0.837 ± 0.355
0.598CysGlu: 0.598 ± 0.34
1.316CysPhe: 1.316 ± 0.493
0.957CysGly: 0.957 ± 0.284
0.239CysHis: 0.239 ± 0.191
0.957CysIle: 0.957 ± 0.374
1.794CysLys: 1.794 ± 0.568
2.392CysLeu: 2.392 ± 0.737
0.837CysMet: 0.837 ± 0.374
1.794CysAsn: 1.794 ± 0.538
0.598CysPro: 0.598 ± 0.266
0.478CysGln: 0.478 ± 0.244
0.478CysArg: 0.478 ± 0.203
1.794CysSer: 1.794 ± 0.484
1.316CysThr: 1.316 ± 0.537
1.555CysVal: 1.555 ± 0.524
0.359CysTrp: 0.359 ± 0.222
0.957CysTyr: 0.957 ± 0.303
0.0CysXaa: 0.0 ± 0.0
Asp
1.794AspAla: 1.794 ± 0.469
1.316AspCys: 1.316 ± 0.633
3.11AspAsp: 3.11 ± 0.655
2.751AspGlu: 2.751 ± 0.652
2.99AspPhe: 2.99 ± 0.634
2.512AspGly: 2.512 ± 0.896
0.957AspHis: 0.957 ± 0.359
5.023AspIle: 5.023 ± 1.064
2.033AspLys: 2.033 ± 0.596
4.784AspLeu: 4.784 ± 0.759
1.076AspMet: 1.076 ± 0.39
3.349AspAsn: 3.349 ± 0.513
2.512AspPro: 2.512 ± 0.387
1.914AspGln: 1.914 ± 0.765
2.033AspArg: 2.033 ± 0.492
4.425AspSer: 4.425 ± 0.708
2.512AspThr: 2.512 ± 0.541
2.87AspVal: 2.87 ± 0.623
0.478AspTrp: 0.478 ± 0.191
2.272AspTyr: 2.272 ± 0.446
0.0AspXaa: 0.0 ± 0.0
Glu
1.555GluAla: 1.555 ± 0.351
0.837GluCys: 0.837 ± 0.334
2.99GluAsp: 2.99 ± 0.689
3.588GluGlu: 3.588 ± 0.998
2.512GluPhe: 2.512 ± 0.616
2.153GluGly: 2.153 ± 0.585
0.957GluHis: 0.957 ± 0.353
5.502GluIle: 5.502 ± 1.231
3.349GluLys: 3.349 ± 1.094
4.545GluLeu: 4.545 ± 0.579
1.196GluMet: 1.196 ± 0.388
4.545GluAsn: 4.545 ± 0.725
1.555GluPro: 1.555 ± 0.412
1.435GluGln: 1.435 ± 0.423
1.555GluArg: 1.555 ± 0.541
4.066GluSer: 4.066 ± 0.674
3.11GluThr: 3.11 ± 0.613
2.272GluVal: 2.272 ± 0.659
0.837GluTrp: 0.837 ± 0.315
1.674GluTyr: 1.674 ± 0.428
0.0GluXaa: 0.0 ± 0.0
Phe
2.512PheAla: 2.512 ± 0.429
0.837PheCys: 0.837 ± 0.376
2.751PheAsp: 2.751 ± 0.786
2.751PheGlu: 2.751 ± 0.708
3.11PhePhe: 3.11 ± 0.723
1.794PheGly: 1.794 ± 0.398
1.555PheHis: 1.555 ± 0.532
3.588PheIle: 3.588 ± 0.668
4.066PheLys: 4.066 ± 0.487
4.784PheLeu: 4.784 ± 0.769
1.674PheMet: 1.674 ± 0.389
3.468PheAsn: 3.468 ± 0.637
2.392PhePro: 2.392 ± 0.362
1.914PheGln: 1.914 ± 0.413
2.751PheArg: 2.751 ± 0.559
5.263PheSer: 5.263 ± 1.116
2.512PheThr: 2.512 ± 0.537
4.066PheVal: 4.066 ± 0.822
0.598PheTrp: 0.598 ± 0.286
2.512PheTyr: 2.512 ± 0.623
0.0PheXaa: 0.0 ± 0.0
Gly
2.392GlyAla: 2.392 ± 0.695
0.718GlyCys: 0.718 ± 0.278
2.272GlyAsp: 2.272 ± 0.509
2.512GlyGlu: 2.512 ± 0.719
2.033GlyPhe: 2.033 ± 0.608
3.827GlyGly: 3.827 ± 1.02
0.957GlyHis: 0.957 ± 0.312
2.272GlyIle: 2.272 ± 0.577
2.751GlyLys: 2.751 ± 0.436
5.143GlyLeu: 5.143 ± 1.531
1.555GlyMet: 1.555 ± 0.404
4.306GlyAsn: 4.306 ± 0.986
1.794GlyPro: 1.794 ± 0.541
2.392GlyGln: 2.392 ± 0.709
3.468GlyArg: 3.468 ± 0.65
4.066GlySer: 4.066 ± 1.007
3.468GlyThr: 3.468 ± 0.759
2.631GlyVal: 2.631 ± 0.522
0.837GlyTrp: 0.837 ± 0.287
1.316GlyTyr: 1.316 ± 0.534
0.0GlyXaa: 0.0 ± 0.0
His
0.837HisAla: 0.837 ± 0.25
0.718HisCys: 0.718 ± 0.262
0.359HisAsp: 0.359 ± 0.218
0.957HisGlu: 0.957 ± 0.388
1.316HisPhe: 1.316 ± 0.417
0.478HisGly: 0.478 ± 0.251
0.239HisHis: 0.239 ± 0.135
0.837HisIle: 0.837 ± 0.32
0.718HisLys: 0.718 ± 0.305
1.316HisLeu: 1.316 ± 0.348
0.12HisMet: 0.12 ± 0.118
1.555HisAsn: 1.555 ± 0.393
1.196HisPro: 1.196 ± 0.41
0.359HisGln: 0.359 ± 0.227
0.957HisArg: 0.957 ± 0.355
1.555HisSer: 1.555 ± 0.596
1.435HisThr: 1.435 ± 0.356
1.196HisVal: 1.196 ± 0.394
0.239HisTrp: 0.239 ± 0.196
0.478HisTyr: 0.478 ± 0.219
0.0HisXaa: 0.0 ± 0.0
Ile
2.87IleAla: 2.87 ± 0.708
1.555IleCys: 1.555 ± 0.494
3.588IleAsp: 3.588 ± 0.743
3.229IleGlu: 3.229 ± 0.62
4.186IlePhe: 4.186 ± 1.019
3.708IleGly: 3.708 ± 0.664
1.316IleHis: 1.316 ± 0.392
3.11IleIle: 3.11 ± 0.562
4.186IleLys: 4.186 ± 1.03
7.415IleLeu: 7.415 ± 1.078
1.794IleMet: 1.794 ± 0.498
4.665IleAsn: 4.665 ± 1.226
3.708IlePro: 3.708 ± 0.631
3.468IleGln: 3.468 ± 0.591
2.631IleArg: 2.631 ± 0.548
4.306IleSer: 4.306 ± 0.647
4.665IleThr: 4.665 ± 1.156
3.827IleVal: 3.827 ± 0.651
0.598IleTrp: 0.598 ± 0.289
1.914IleTyr: 1.914 ± 0.634
0.0IleXaa: 0.0 ± 0.0
Lys
2.631LysAla: 2.631 ± 0.714
1.076LysCys: 1.076 ± 0.498
2.751LysAsp: 2.751 ± 0.594
3.947LysGlu: 3.947 ± 1.209
3.947LysPhe: 3.947 ± 0.822
2.87LysGly: 2.87 ± 0.569
1.316LysHis: 1.316 ± 0.666
3.588LysIle: 3.588 ± 0.545
3.827LysLys: 3.827 ± 0.838
6.698LysLeu: 6.698 ± 1.074
1.316LysMet: 1.316 ± 0.405
3.827LysAsn: 3.827 ± 1.037
2.631LysPro: 2.631 ± 0.575
1.316LysGln: 1.316 ± 0.343
3.229LysArg: 3.229 ± 0.719
4.784LysSer: 4.784 ± 0.91
3.708LysThr: 3.708 ± 0.651
2.033LysVal: 2.033 ± 0.449
0.239LysTrp: 0.239 ± 0.171
2.392LysTyr: 2.392 ± 0.519
0.0LysXaa: 0.0 ± 0.0
Leu
5.263LeuAla: 5.263 ± 0.707
3.349LeuCys: 3.349 ± 0.97
4.066LeuAsp: 4.066 ± 0.717
4.186LeuGlu: 4.186 ± 0.735
4.186LeuPhe: 4.186 ± 0.833
4.425LeuGly: 4.425 ± 0.922
1.914LeuHis: 1.914 ± 0.534
5.023LeuIle: 5.023 ± 0.824
6.937LeuLys: 6.937 ± 1.152
8.731LeuLeu: 8.731 ± 1.727
1.435LeuMet: 1.435 ± 0.463
6.698LeuAsn: 6.698 ± 1.362
6.459LeuPro: 6.459 ± 0.89
5.502LeuGln: 5.502 ± 0.572
4.904LeuArg: 4.904 ± 0.876
7.176LeuSer: 7.176 ± 1.162
5.98LeuThr: 5.98 ± 0.856
5.621LeuVal: 5.621 ± 1.378
1.076LeuTrp: 1.076 ± 0.42
3.708LeuTyr: 3.708 ± 0.637
0.0LeuXaa: 0.0 ± 0.0
Met
1.316MetAla: 1.316 ± 0.365
0.478MetCys: 0.478 ± 0.323
1.914MetAsp: 1.914 ± 0.561
0.718MetGlu: 0.718 ± 0.342
1.794MetPhe: 1.794 ± 0.582
1.196MetGly: 1.196 ± 0.632
0.359MetHis: 0.359 ± 0.219
1.196MetIle: 1.196 ± 0.394
0.957MetLys: 0.957 ± 0.403
2.631MetLeu: 2.631 ± 0.472
0.359MetMet: 0.359 ± 0.339
1.196MetAsn: 1.196 ± 0.366
1.196MetPro: 1.196 ± 0.361
1.076MetGln: 1.076 ± 0.39
1.076MetArg: 1.076 ± 0.314
3.588MetSer: 3.588 ± 0.686
1.316MetThr: 1.316 ± 0.44
0.837MetVal: 0.837 ± 0.428
0.12MetTrp: 0.12 ± 0.125
1.196MetTyr: 1.196 ± 0.317
0.0MetXaa: 0.0 ± 0.0
Asn
1.076AsnAla: 1.076 ± 0.27
1.316AsnCys: 1.316 ± 0.634
2.87AsnAsp: 2.87 ± 0.475
4.425AsnGlu: 4.425 ± 0.837
3.827AsnPhe: 3.827 ± 0.69
3.349AsnGly: 3.349 ± 0.978
0.837AsnHis: 0.837 ± 0.253
5.621AsnIle: 5.621 ± 0.933
2.99AsnLys: 2.99 ± 0.495
7.655AsnLeu: 7.655 ± 1.265
1.674AsnMet: 1.674 ± 0.426
3.349AsnAsn: 3.349 ± 0.794
3.947AsnPro: 3.947 ± 0.806
2.87AsnGln: 2.87 ± 0.658
2.272AsnArg: 2.272 ± 0.483
5.382AsnSer: 5.382 ± 0.808
4.425AsnThr: 4.425 ± 0.577
5.382AsnVal: 5.382 ± 1.105
0.718AsnTrp: 0.718 ± 0.281
3.468AsnTyr: 3.468 ± 0.828
0.0AsnXaa: 0.0 ± 0.0
Pro
3.947ProAla: 3.947 ± 0.973
0.718ProCys: 0.718 ± 0.294
2.99ProAsp: 2.99 ± 0.554
3.349ProGlu: 3.349 ± 0.785
3.229ProPhe: 3.229 ± 0.554
2.87ProGly: 2.87 ± 0.605
0.957ProHis: 0.957 ± 0.319
2.751ProIle: 2.751 ± 0.405
1.794ProLys: 1.794 ± 0.458
5.023ProLeu: 5.023 ± 0.948
1.555ProMet: 1.555 ± 0.292
2.153ProAsn: 2.153 ± 0.597
4.306ProPro: 4.306 ± 0.998
1.435ProGln: 1.435 ± 0.47
2.392ProArg: 2.392 ± 0.547
4.066ProSer: 4.066 ± 0.656
4.784ProThr: 4.784 ± 0.821
3.827ProVal: 3.827 ± 1.054
0.12ProTrp: 0.12 ± 0.106
1.914ProTyr: 1.914 ± 0.618
0.0ProXaa: 0.0 ± 0.0
Gln
2.272GlnAla: 2.272 ± 0.672
0.718GlnCys: 0.718 ± 0.317
1.435GlnAsp: 1.435 ± 0.389
1.674GlnGlu: 1.674 ± 0.6
1.914GlnPhe: 1.914 ± 0.585
2.512GlnGly: 2.512 ± 0.488
0.598GlnHis: 0.598 ± 0.224
2.751GlnIle: 2.751 ± 0.632
1.794GlnLys: 1.794 ± 0.5
4.186GlnLeu: 4.186 ± 0.757
0.718GlnMet: 0.718 ± 0.234
2.631GlnAsn: 2.631 ± 0.698
1.674GlnPro: 1.674 ± 0.481
2.272GlnGln: 2.272 ± 0.628
0.837GlnArg: 0.837 ± 0.47
2.99GlnSer: 2.99 ± 0.471
2.99GlnThr: 2.99 ± 0.566
2.153GlnVal: 2.153 ± 0.461
0.718GlnTrp: 0.718 ± 0.29
2.153GlnTyr: 2.153 ± 0.441
0.0GlnXaa: 0.0 ± 0.0
Arg
1.674ArgAla: 1.674 ± 0.502
0.718ArgCys: 0.718 ± 0.268
2.272ArgAsp: 2.272 ± 0.626
2.153ArgGlu: 2.153 ± 0.405
1.435ArgPhe: 1.435 ± 0.543
2.153ArgGly: 2.153 ± 0.445
0.359ArgHis: 0.359 ± 0.194
3.708ArgIle: 3.708 ± 0.612
2.631ArgLys: 2.631 ± 0.568
4.066ArgLeu: 4.066 ± 0.79
1.316ArgMet: 1.316 ± 0.555
3.708ArgAsn: 3.708 ± 0.741
2.153ArgPro: 2.153 ± 0.581
2.033ArgGln: 2.033 ± 0.556
3.588ArgArg: 3.588 ± 1.442
3.827ArgSer: 3.827 ± 0.607
2.87ArgThr: 2.87 ± 0.557
2.033ArgVal: 2.033 ± 0.561
0.359ArgTrp: 0.359 ± 0.177
2.153ArgTyr: 2.153 ± 0.486
0.0ArgXaa: 0.0 ± 0.0
Ser
4.904SerAla: 4.904 ± 0.685
1.914SerCys: 1.914 ± 0.566
4.784SerAsp: 4.784 ± 1.117
3.349SerGlu: 3.349 ± 0.576
5.621SerPhe: 5.621 ± 0.754
4.665SerGly: 4.665 ± 0.604
1.196SerHis: 1.196 ± 0.301
5.741SerIle: 5.741 ± 1.007
4.545SerLys: 4.545 ± 0.891
7.176SerLeu: 7.176 ± 1.139
1.316SerMet: 1.316 ± 0.415
5.263SerAsn: 5.263 ± 0.739
4.066SerPro: 4.066 ± 0.685
1.794SerGln: 1.794 ± 0.359
3.229SerArg: 3.229 ± 0.954
6.219SerSer: 6.219 ± 0.774
5.502SerThr: 5.502 ± 0.929
4.425SerVal: 4.425 ± 0.948
0.359SerTrp: 0.359 ± 0.181
2.99SerTyr: 2.99 ± 0.555
0.0SerXaa: 0.0 ± 0.0
Thr
4.066ThrAla: 4.066 ± 0.795
1.435ThrCys: 1.435 ± 0.467
2.631ThrAsp: 2.631 ± 0.545
3.827ThrGlu: 3.827 ± 0.801
3.229ThrPhe: 3.229 ± 0.604
3.588ThrGly: 3.588 ± 0.576
0.957ThrHis: 0.957 ± 0.398
5.502ThrIle: 5.502 ± 0.62
4.425ThrLys: 4.425 ± 0.771
6.459ThrLeu: 6.459 ± 0.909
0.718ThrMet: 0.718 ± 0.327
4.066ThrAsn: 4.066 ± 0.907
3.349ThrPro: 3.349 ± 0.707
2.392ThrGln: 2.392 ± 0.647
3.229ThrArg: 3.229 ± 0.553
4.545ThrSer: 4.545 ± 1.056
3.11ThrThr: 3.11 ± 0.632
4.545ThrVal: 4.545 ± 0.908
1.076ThrTrp: 1.076 ± 0.358
2.87ThrTyr: 2.87 ± 0.65
0.0ThrXaa: 0.0 ± 0.0
Val
3.708ValAla: 3.708 ± 0.775
0.478ValCys: 0.478 ± 0.236
2.631ValAsp: 2.631 ± 0.601
2.272ValGlu: 2.272 ± 0.438
2.751ValPhe: 2.751 ± 0.572
2.392ValGly: 2.392 ± 0.673
0.957ValHis: 0.957 ± 0.391
2.99ValIle: 2.99 ± 0.825
2.751ValLys: 2.751 ± 0.831
4.545ValLeu: 4.545 ± 0.751
2.392ValMet: 2.392 ± 0.561
4.066ValAsn: 4.066 ± 0.77
4.545ValPro: 4.545 ± 1.072
2.99ValGln: 2.99 ± 0.661
3.588ValArg: 3.588 ± 0.616
3.708ValSer: 3.708 ± 0.886
5.143ValThr: 5.143 ± 0.65
3.588ValVal: 3.588 ± 0.875
0.957ValTrp: 0.957 ± 0.188
2.272ValTyr: 2.272 ± 0.571
0.0ValXaa: 0.0 ± 0.0
Trp
0.478TrpAla: 0.478 ± 0.213
0.478TrpCys: 0.478 ± 0.214
0.478TrpAsp: 0.478 ± 0.227
0.239TrpGlu: 0.239 ± 0.127
0.359TrpPhe: 0.359 ± 0.182
0.598TrpGly: 0.598 ± 0.294
0.0TrpHis: 0.0 ± 0.0
0.478TrpIle: 0.478 ± 0.201
1.076TrpLys: 1.076 ± 0.319
0.837TrpLeu: 0.837 ± 0.289
0.478TrpMet: 0.478 ± 0.262
0.598TrpAsn: 0.598 ± 0.299
0.957TrpPro: 0.957 ± 0.408
0.718TrpGln: 0.718 ± 0.374
0.478TrpArg: 0.478 ± 0.218
0.957TrpSer: 0.957 ± 0.279
1.435TrpThr: 1.435 ± 0.412
0.239TrpVal: 0.239 ± 0.191
0.239TrpTrp: 0.239 ± 0.175
0.239TrpTyr: 0.239 ± 0.135
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.196TyrAla: 1.196 ± 0.376
0.957TyrCys: 0.957 ± 0.331
3.468TyrAsp: 3.468 ± 0.782
1.555TyrGlu: 1.555 ± 0.531
2.751TyrPhe: 2.751 ± 0.593
2.033TyrGly: 2.033 ± 0.484
0.837TyrHis: 0.837 ± 0.319
1.914TyrIle: 1.914 ± 0.429
2.272TyrLys: 2.272 ± 0.543
3.588TyrLeu: 3.588 ± 0.984
1.794TyrMet: 1.794 ± 0.466
3.708TyrAsn: 3.708 ± 0.499
2.153TyrPro: 2.153 ± 0.398
0.957TyrGln: 0.957 ± 0.397
1.196TyrArg: 1.196 ± 0.236
3.349TyrSer: 3.349 ± 0.774
2.033TyrThr: 2.033 ± 0.541
2.153TyrVal: 2.153 ± 0.655
0.957TyrTrp: 0.957 ± 0.297
1.794TyrTyr: 1.794 ± 0.554
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 24 proteins (8362 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski