Coprobacillus cateniformis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Coprobacillus

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3839 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E7G850|E7G850_9FIRM ABC superfamily ATP binding cassette transporter OS=Coprobacillus cateniformis OX=100884 GN=HMPREF9488_00938 PE=4 SV=1
MM1 pKa = 7.26GKK3 pKa = 10.54LYY5 pKa = 10.23ISYY8 pKa = 10.14EE9 pKa = 4.33AIEE12 pKa = 4.54EE13 pKa = 4.03MGKK16 pKa = 10.39DD17 pKa = 3.38YY18 pKa = 11.25FEE20 pKa = 4.47NKK22 pKa = 9.99SYY24 pKa = 11.27EE25 pKa = 4.22DD26 pKa = 3.88YY27 pKa = 11.7VDD29 pKa = 3.64LAKK32 pKa = 10.5FDD34 pKa = 4.08IVHH37 pKa = 6.98LDD39 pKa = 3.45DD40 pKa = 6.09GLWLQQDD47 pKa = 4.17DD48 pKa = 5.53DD49 pKa = 5.17GDD51 pKa = 4.42LYY53 pKa = 10.74ISYY56 pKa = 10.84NDD58 pKa = 3.37YY59 pKa = 11.65DD60 pKa = 4.56DD61 pKa = 4.34FQFYY65 pKa = 10.73DD66 pKa = 3.72VEE68 pKa = 4.26EE69 pKa = 4.32LSNLKK74 pKa = 10.35NADD77 pKa = 3.52TVLKK81 pKa = 10.57DD82 pKa = 4.47FKK84 pKa = 11.36

Molecular weight: 10.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E7GB63|E7GB63_9FIRM Uncharacterized protein OS=Coprobacillus cateniformis OX=100884 GN=HMPREF9488_02004 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.34QPNKK9 pKa = 8.51RR10 pKa = 11.84KK11 pKa = 9.77RR12 pKa = 11.84SKK14 pKa = 8.62THH16 pKa = 5.5GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84KK29 pKa = 9.08VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84KK36 pKa = 9.02RR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.93VLSAA44 pKa = 4.11

Molecular weight: 5.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3839

0

3839

1123468

32

6836

292.6

33.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.48 ± 0.042

1.411 ± 0.019

5.864 ± 0.039

6.801 ± 0.043

4.543 ± 0.036

5.897 ± 0.047

2.283 ± 0.022

9.118 ± 0.046

7.635 ± 0.04

9.296 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.072 ± 0.027

5.282 ± 0.039

2.845 ± 0.027

4.038 ± 0.033

3.284 ± 0.025

6.022 ± 0.031

5.218 ± 0.039

6.247 ± 0.038

0.74 ± 0.014

4.925 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski