Phyllobacterium endophyticum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Phyllobacterium

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5125 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P7B191|A0A2P7B191_9RHIZ Urea ABC transporter ATP-binding protein UrtD OS=Phyllobacterium endophyticum OX=1149773 GN=urtD PE=4 SV=1
MM1 pKa = 7.49IGSIYY6 pKa = 10.6GDD8 pKa = 3.15NLYY11 pKa = 11.37GNNQANTLIGGRR23 pKa = 11.84GNDD26 pKa = 4.47DD27 pKa = 3.37FWAGDD32 pKa = 3.58GRR34 pKa = 11.84DD35 pKa = 3.84TMDD38 pKa = 4.31GGAGDD43 pKa = 4.61DD44 pKa = 3.65QFHH47 pKa = 6.19YY48 pKa = 10.97ASLAALDD55 pKa = 3.81GDD57 pKa = 4.49RR58 pKa = 11.84INGFTYY64 pKa = 9.64GYY66 pKa = 9.07EE67 pKa = 3.78QDD69 pKa = 3.87RR70 pKa = 11.84VVLTGLGVKK79 pKa = 9.53FVNIIVDD86 pKa = 3.74EE87 pKa = 4.7VIGGVLYY94 pKa = 10.36YY95 pKa = 10.44KK96 pKa = 9.48ITGVGPDD103 pKa = 3.35YY104 pKa = 10.06TAEE107 pKa = 3.83YY108 pKa = 9.39TIAIDD113 pKa = 3.97GKK115 pKa = 9.87GSLFPRR121 pKa = 11.84EE122 pKa = 3.8EE123 pKa = 4.35DD124 pKa = 3.84VFTLL128 pKa = 4.33

Molecular weight: 13.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P7B0F2|A0A2P7B0F2_9RHIZ Serine/threonine protein phosphatase OS=Phyllobacterium endophyticum OX=1149773 GN=CU100_04235 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.27QPSKK9 pKa = 9.43LVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.38GFRR19 pKa = 11.84ARR21 pKa = 11.84MATAGGRR28 pKa = 11.84KK29 pKa = 9.15VIAARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5125

0

5125

1598008

26

3799

311.8

33.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.236 ± 0.04

0.782 ± 0.011

5.695 ± 0.029

5.649 ± 0.034

3.947 ± 0.024

8.327 ± 0.051

2.024 ± 0.018

5.97 ± 0.027

3.905 ± 0.032

9.87 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.508 ± 0.018

3.142 ± 0.023

4.865 ± 0.028

3.179 ± 0.02

6.459 ± 0.034

5.988 ± 0.027

5.454 ± 0.031

7.31 ± 0.029

1.287 ± 0.014

2.403 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski