Trailing lespedeza virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Procedovirinae

Average proteome isoelectric point is 7.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F1BA31|F1BA31_9TOMB Putative movement protein 1 OS=Trailing lespedeza virus 1 OX=944580 PE=4 SV=1
MM1 pKa = 7.4FRR3 pKa = 11.84DD4 pKa = 3.95LCRR7 pKa = 11.84YY8 pKa = 9.27ASQIVVGSTVLAVNVSVLSVAVQLRR33 pKa = 11.84GAVAVYY39 pKa = 9.09EE40 pKa = 4.35VASKK44 pKa = 10.84CVTALEE50 pKa = 4.72DD51 pKa = 3.86CVSDD55 pKa = 5.13LRR57 pKa = 11.84DD58 pKa = 3.47SLKK61 pKa = 10.51PVPDD65 pKa = 3.51EE66 pKa = 4.71LYY68 pKa = 11.09NPSLCAALRR77 pKa = 11.84MNNTDD82 pKa = 3.52TEE84 pKa = 4.41LTAEE88 pKa = 4.71DD89 pKa = 5.31LLTTDD94 pKa = 3.62RR95 pKa = 11.84VLVNTWEE102 pKa = 3.92TDD104 pKa = 3.21EE105 pKa = 5.84AKK107 pKa = 10.43FKK109 pKa = 10.78YY110 pKa = 9.63RR111 pKa = 11.84YY112 pKa = 8.79KK113 pKa = 11.02ARR115 pKa = 11.84IQSGQRR121 pKa = 11.84GRR123 pKa = 11.84FMYY126 pKa = 10.48EE127 pKa = 3.51LVAYY131 pKa = 8.46GKK133 pKa = 9.46NHH135 pKa = 6.76FGRR138 pKa = 11.84APRR141 pKa = 11.84CCDD144 pKa = 3.2SNYY147 pKa = 10.52LSVTRR152 pKa = 11.84LLVNRR157 pKa = 11.84CNEE160 pKa = 3.81LHH162 pKa = 6.16LTPTQTRR169 pKa = 11.84NVVAEE174 pKa = 3.99AVSLVFIPDD183 pKa = 3.41EE184 pKa = 4.15EE185 pKa = 4.78EE186 pKa = 3.64IRR188 pKa = 11.84QTMLTNSHH196 pKa = 5.7YY197 pKa = 11.04AYY199 pKa = 9.23MQRR202 pKa = 11.84TRR204 pKa = 11.84QSVVSTVEE212 pKa = 3.96PWWKK216 pKa = 10.2EE217 pKa = 3.7LLLGPSNAKK226 pKa = 8.27NWRR229 pKa = 11.84RR230 pKa = 11.84AWIEE234 pKa = 3.63ICGLPEE240 pKa = 3.64KK241 pKa = 10.39QAISFAKK248 pKa = 10.36

Molecular weight: 28.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F1BA33|F1BA33_9TOMB Capsid protein OS=Trailing lespedeza virus 1 OX=944580 PE=3 SV=1
MM1 pKa = 6.87SHH3 pKa = 6.38SRR5 pKa = 11.84GLIHH9 pKa = 6.82TLLVLLLVVSLLWLKK24 pKa = 9.69QYY26 pKa = 10.22RR27 pKa = 11.84WSITLTFDD35 pKa = 2.98SSLNRR40 pKa = 11.84VIALALLGAVLTSVGNSSTVYY61 pKa = 10.55YY62 pKa = 10.28INNSTNEE69 pKa = 3.8NKK71 pKa = 9.62TNHH74 pKa = 5.86IKK76 pKa = 10.34IEE78 pKa = 4.17TT79 pKa = 3.68

Molecular weight: 8.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1510

67

770

302.0

33.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.079 ± 0.766

2.583 ± 0.548

4.437 ± 0.341

5.099 ± 0.899

3.444 ± 0.492

5.497 ± 0.721

2.185 ± 0.76

4.636 ± 0.657

4.437 ± 0.206

8.874 ± 1.376

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.921 ± 0.508

5.364 ± 0.387

3.841 ± 0.471

3.311 ± 0.295

6.954 ± 0.717

7.483 ± 1.42

7.02 ± 1.216

9.073 ± 0.822

1.854 ± 0.141

3.841 ± 0.472
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski