Amino acid dipepetide frequency for Trailing lespedeza virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.952AlaAla: 7.952 ± 2.432
1.988AlaCys: 1.988 ± 1.288
3.976AlaAsp: 3.976 ± 4.141
5.302AlaGlu: 5.302 ± 1.547
4.639AlaPhe: 4.639 ± 1.723
1.988AlaGly: 1.988 ± 2.071
3.313AlaHis: 3.313 ± 1.417
5.964AlaIle: 5.964 ± 1.482
5.964AlaLys: 5.964 ± 2.598
5.302AlaLeu: 5.302 ± 3.378
0.663AlaMet: 0.663 ± 0.429
1.988AlaAsn: 1.988 ± 1.288
2.651AlaPro: 2.651 ± 0.605
0.0AlaGln: 0.0 ± 0.0
4.639AlaArg: 4.639 ± 1.415
5.302AlaSer: 5.302 ± 1.59
1.988AlaThr: 1.988 ± 2.349
11.266AlaVal: 11.266 ± 2.35
1.325AlaTrp: 1.325 ± 0.714
4.639AlaTyr: 4.639 ± 1.325
0.0AlaXaa: 0.0 ± 0.0
Cys
3.313CysAla: 3.313 ± 0.967
1.325CysCys: 1.325 ± 0.714
1.325CysAsp: 1.325 ± 0.714
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
2.651CysGly: 2.651 ± 1.165
0.663CysHis: 0.663 ± 0.429
0.663CysIle: 0.663 ± 0.429
1.988CysLys: 1.988 ± 1.288
2.651CysLeu: 2.651 ± 1.717
0.0CysMet: 0.0 ± 0.0
2.651CysAsn: 2.651 ± 0.605
0.0CysPro: 0.0 ± 0.0
0.663CysGln: 0.663 ± 0.429
1.988CysArg: 1.988 ± 0.694
1.325CysSer: 1.325 ± 1.38
0.0CysThr: 0.0 ± 0.0
3.976CysVal: 3.976 ± 1.732
0.0CysTrp: 0.0 ± 0.0
0.663CysTyr: 0.663 ± 0.429
0.0CysXaa: 0.0 ± 0.0
Asp
1.988AspAla: 1.988 ± 1.175
1.988AspCys: 1.988 ± 0.866
1.325AspAsp: 1.325 ± 0.859
5.302AspGlu: 5.302 ± 2.38
1.325AspPhe: 1.325 ± 0.553
2.651AspGly: 2.651 ± 1.107
0.0AspHis: 0.0 ± 0.0
0.663AspIle: 0.663 ± 0.429
0.663AspLys: 0.663 ± 1.953
5.964AspLeu: 5.964 ± 1.978
1.325AspMet: 1.325 ± 0.859
1.325AspAsn: 1.325 ± 0.553
3.313AspPro: 3.313 ± 1.702
1.325AspGln: 1.325 ± 0.859
1.325AspArg: 1.325 ± 0.714
7.29AspSer: 7.29 ± 3.485
3.313AspThr: 3.313 ± 1.64
1.988AspVal: 1.988 ± 0.71
0.663AspTrp: 0.663 ± 0.429
0.663AspTyr: 0.663 ± 0.69
0.0AspXaa: 0.0 ± 0.0
Glu
5.964GluAla: 5.964 ± 1.459
1.988GluCys: 1.988 ± 1.288
4.639GluAsp: 4.639 ± 1.827
3.976GluGlu: 3.976 ± 1.732
0.663GluPhe: 0.663 ± 0.429
0.0GluGly: 0.0 ± 0.0
1.325GluHis: 1.325 ± 0.859
4.639GluIle: 4.639 ± 2.008
3.313GluLys: 3.313 ± 0.787
7.952GluLeu: 7.952 ± 3.1
0.0GluMet: 0.0 ± 0.0
1.325GluAsn: 1.325 ± 1.211
1.988GluPro: 1.988 ± 0.866
0.663GluGln: 0.663 ± 0.429
1.988GluArg: 1.988 ± 1.288
1.325GluSer: 1.325 ± 0.553
3.976GluThr: 3.976 ± 2.25
2.651GluVal: 2.651 ± 1.681
0.663GluTrp: 0.663 ± 0.429
1.988GluTyr: 1.988 ± 1.175
0.0GluXaa: 0.0 ± 0.0
Phe
3.313PheAla: 3.313 ± 0.967
0.663PheCys: 0.663 ± 0.429
1.988PheAsp: 1.988 ± 1.262
3.313PheGlu: 3.313 ± 1.417
0.663PhePhe: 0.663 ± 0.69
3.313PheGly: 3.313 ± 1.528
0.663PheHis: 0.663 ± 0.429
1.988PheIle: 1.988 ± 0.694
1.325PheLys: 1.325 ± 0.714
0.663PheLeu: 0.663 ± 0.429
1.988PheMet: 1.988 ± 1.408
1.988PheAsn: 1.988 ± 1.81
1.325PhePro: 1.325 ± 0.553
0.0PheGln: 0.0 ± 0.0
2.651PheArg: 2.651 ± 1.165
1.988PheSer: 1.988 ± 2.071
1.325PheThr: 1.325 ± 1.38
3.313PheVal: 3.313 ± 1.702
0.0PheTrp: 0.0 ± 0.0
1.325PheTyr: 1.325 ± 0.859
0.0PheXaa: 0.0 ± 0.0
Gly
3.976GlyAla: 3.976 ± 1.177
0.663GlyCys: 0.663 ± 0.429
1.325GlyAsp: 1.325 ± 0.859
1.325GlyGlu: 1.325 ± 0.553
1.988GlyPhe: 1.988 ± 1.288
2.651GlyGly: 2.651 ± 1.651
0.0GlyHis: 0.0 ± 0.0
5.302GlyIle: 5.302 ± 3.596
3.313GlyLys: 3.313 ± 0.967
5.302GlyLeu: 5.302 ± 1.875
0.663GlyMet: 0.663 ± 0.429
3.313GlyAsn: 3.313 ± 2.054
1.988GlyPro: 1.988 ± 0.694
3.313GlyGln: 3.313 ± 0.787
5.964GlyArg: 5.964 ± 3.141
3.976GlySer: 3.976 ± 1.677
2.651GlyThr: 2.651 ± 1.107
3.976GlyVal: 3.976 ± 1.66
0.663GlyTrp: 0.663 ± 0.69
2.651GlyTyr: 2.651 ± 1.717
0.0GlyXaa: 0.0 ± 0.0
His
1.988HisAla: 1.988 ± 1.288
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
0.663HisGlu: 0.663 ± 0.429
1.988HisPhe: 1.988 ± 1.826
0.663HisGly: 0.663 ± 0.69
1.325HisHis: 1.325 ± 0.859
0.663HisIle: 0.663 ± 1.307
0.0HisLys: 0.0 ± 0.0
3.976HisLeu: 3.976 ± 1.918
0.0HisMet: 0.0 ± 0.0
0.0HisAsn: 0.0 ± 0.0
1.325HisPro: 1.325 ± 0.859
0.0HisGln: 0.0 ± 0.0
1.325HisArg: 1.325 ± 0.859
3.313HisSer: 3.313 ± 2.388
0.663HisThr: 0.663 ± 1.307
2.651HisVal: 2.651 ± 1.717
0.0HisTrp: 0.0 ± 0.0
1.325HisTyr: 1.325 ± 0.714
0.0HisXaa: 0.0 ± 0.0
Ile
1.325IleAla: 1.325 ± 1.211
2.651IleCys: 2.651 ± 0.605
1.325IleAsp: 1.325 ± 1.804
3.976IleGlu: 3.976 ± 2.25
1.325IlePhe: 1.325 ± 0.553
5.302IleGly: 5.302 ± 1.873
1.325IleHis: 1.325 ± 1.211
1.988IleIle: 1.988 ± 1.81
1.325IleLys: 1.325 ± 1.424
1.325IleLeu: 1.325 ± 0.859
0.663IleMet: 0.663 ± 0.69
1.988IleAsn: 1.988 ± 1.196
3.313IlePro: 3.313 ± 0.787
1.325IleGln: 1.325 ± 0.714
2.651IleArg: 2.651 ± 0.605
3.976IleSer: 3.976 ± 1.115
4.639IleThr: 4.639 ± 2.228
5.302IleVal: 5.302 ± 3.275
0.0IleTrp: 0.0 ± 0.0
0.663IleTyr: 0.663 ± 0.429
0.0IleXaa: 0.0 ± 0.0
Lys
3.976LysAla: 3.976 ± 0.914
2.651LysCys: 2.651 ± 0.605
0.663LysAsp: 0.663 ± 0.429
1.325LysGlu: 1.325 ± 0.714
1.988LysPhe: 1.988 ± 0.694
1.988LysGly: 1.988 ± 1.749
0.0LysHis: 0.0 ± 0.0
1.988LysIle: 1.988 ± 1.196
0.0LysLys: 0.0 ± 0.0
3.976LysLeu: 3.976 ± 1.42
1.325LysMet: 1.325 ± 0.638
4.639LysAsn: 4.639 ± 1.827
4.639LysPro: 4.639 ± 1.876
3.313LysGln: 3.313 ± 1.302
3.313LysArg: 3.313 ± 1.944
0.663LysSer: 0.663 ± 0.69
0.663LysThr: 0.663 ± 1.307
2.651LysVal: 2.651 ± 1.846
0.0LysTrp: 0.0 ± 0.0
3.976LysTyr: 3.976 ± 1.568
0.663LysXaa: 0.663 ± 0.429
Leu
4.639LeuAla: 4.639 ± 0.998
3.313LeuCys: 3.313 ± 1.228
0.663LeuAsp: 0.663 ± 0.429
2.651LeuGlu: 2.651 ± 1.165
1.325LeuPhe: 1.325 ± 0.553
2.651LeuGly: 2.651 ± 1.231
1.988LeuHis: 1.988 ± 0.866
3.313LeuIle: 3.313 ± 1.159
6.627LeuLys: 6.627 ± 2.548
13.254LeuLeu: 13.254 ± 5.347
0.0LeuMet: 0.0 ± 0.0
4.639LeuAsn: 4.639 ± 1.306
3.313LeuPro: 3.313 ± 1.531
3.976LeuGln: 3.976 ± 2.576
7.952LeuArg: 7.952 ± 2.06
4.639LeuSer: 4.639 ± 1.325
9.94LeuThr: 9.94 ± 2.342
7.29LeuVal: 7.29 ± 3.0
3.313LeuTrp: 3.313 ± 1.159
3.313LeuTyr: 3.313 ± 0.787
0.0LeuXaa: 0.0 ± 0.0
Met
0.0MetAla: 0.0 ± 0.0
0.663MetCys: 0.663 ± 0.429
0.663MetAsp: 0.663 ± 0.429
0.663MetGlu: 0.663 ± 0.429
1.325MetPhe: 1.325 ± 0.714
1.325MetGly: 1.325 ± 0.859
0.663MetHis: 0.663 ± 0.429
0.0MetIle: 0.0 ± 0.0
1.988MetLys: 1.988 ± 1.288
1.988MetLeu: 1.988 ± 0.866
0.0MetMet: 0.0 ± 0.0
1.988MetAsn: 1.988 ± 0.694
0.0MetPro: 0.0 ± 0.0
2.651MetGln: 2.651 ± 0.605
0.0MetArg: 0.0 ± 0.0
1.988MetSer: 1.988 ± 2.564
0.0MetThr: 0.0 ± 0.0
1.325MetVal: 1.325 ± 0.859
0.0MetTrp: 0.0 ± 0.0
1.988MetTyr: 1.988 ± 0.866
0.0MetXaa: 0.0 ± 0.0
Asn
2.651AsnAla: 2.651 ± 0.605
0.663AsnCys: 0.663 ± 0.69
1.325AsnAsp: 1.325 ± 0.553
2.651AsnGlu: 2.651 ± 1.231
1.325AsnPhe: 1.325 ± 1.804
3.313AsnGly: 3.313 ± 1.596
3.313AsnHis: 3.313 ± 2.373
2.651AsnIle: 2.651 ± 1.651
1.325AsnLys: 1.325 ± 1.211
3.976AsnLeu: 3.976 ± 1.42
0.663AsnMet: 0.663 ± 0.429
3.313AsnAsn: 3.313 ± 1.302
5.302AsnPro: 5.302 ± 1.384
0.663AsnGln: 0.663 ± 0.69
2.651AsnArg: 2.651 ± 1.231
3.976AsnSer: 3.976 ± 2.335
5.302AsnThr: 5.302 ± 1.211
5.302AsnVal: 5.302 ± 1.56
1.988AsnTrp: 1.988 ± 0.694
1.325AsnTyr: 1.325 ± 0.714
0.0AsnXaa: 0.0 ± 0.0
Pro
0.663ProAla: 0.663 ± 0.429
0.0ProCys: 0.0 ± 0.0
5.302ProAsp: 5.302 ± 2.331
1.325ProGlu: 1.325 ± 0.714
1.325ProPhe: 1.325 ± 0.859
1.988ProGly: 1.988 ± 2.071
0.663ProHis: 0.663 ± 0.429
1.325ProIle: 1.325 ± 1.804
1.325ProLys: 1.325 ± 1.38
0.0ProLeu: 0.0 ± 0.0
1.325ProMet: 1.325 ± 0.859
1.325ProAsn: 1.325 ± 0.859
0.0ProPro: 0.0 ± 0.0
1.988ProGln: 1.988 ± 2.349
4.639ProArg: 4.639 ± 1.494
5.964ProSer: 5.964 ± 2.983
2.651ProThr: 2.651 ± 0.605
3.976ProVal: 3.976 ± 1.918
2.651ProTrp: 2.651 ± 0.605
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.988GlnAla: 1.988 ± 0.866
2.651GlnCys: 2.651 ± 1.107
0.0GlnAsp: 0.0 ± 0.0
0.0GlnGlu: 0.0 ± 0.0
1.325GlnPhe: 1.325 ± 0.553
0.0GlnGly: 0.0 ± 0.0
1.325GlnHis: 1.325 ± 0.859
1.325GlnIle: 1.325 ± 0.714
1.988GlnLys: 1.988 ± 1.175
3.976GlnLeu: 3.976 ± 1.918
0.663GlnMet: 0.663 ± 0.429
0.663GlnAsn: 0.663 ± 0.69
1.325GlnPro: 1.325 ± 0.553
0.663GlnGln: 0.663 ± 0.69
5.302GlnArg: 5.302 ± 1.56
4.639GlnSer: 4.639 ± 1.325
3.313GlnThr: 3.313 ± 1.968
0.0GlnVal: 0.0 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.988GlnTyr: 1.988 ± 1.817
0.0GlnXaa: 0.0 ± 0.0
Arg
7.29ArgAla: 7.29 ± 1.06
2.651ArgCys: 2.651 ± 1.429
4.639ArgAsp: 4.639 ± 1.325
1.988ArgGlu: 1.988 ± 1.288
3.313ArgPhe: 3.313 ± 0.967
7.952ArgGly: 7.952 ± 1.531
0.0ArgHis: 0.0 ± 0.0
3.313ArgIle: 3.313 ± 1.528
1.325ArgLys: 1.325 ± 0.859
3.313ArgLeu: 3.313 ± 0.787
2.651ArgMet: 2.651 ± 1.165
3.976ArgAsn: 3.976 ± 1.115
0.0ArgPro: 0.0 ± 0.0
2.651ArgGln: 2.651 ± 1.429
3.313ArgArg: 3.313 ± 0.787
2.651ArgSer: 2.651 ± 1.107
6.627ArgThr: 6.627 ± 1.278
5.302ArgVal: 5.302 ± 1.367
1.988ArgTrp: 1.988 ± 1.196
4.639ArgTyr: 4.639 ± 2.008
0.0ArgXaa: 0.0 ± 0.0
Ser
5.964SerAla: 5.964 ± 3.053
0.663SerCys: 0.663 ± 0.429
3.313SerAsp: 3.313 ± 0.967
3.313SerGlu: 3.313 ± 1.199
3.313SerPhe: 3.313 ± 0.967
4.639SerGly: 4.639 ± 1.05
2.651SerHis: 2.651 ± 2.562
3.313SerIle: 3.313 ± 1.329
2.651SerLys: 2.651 ± 1.185
9.278SerLeu: 9.278 ± 1.877
1.325SerMet: 1.325 ± 0.777
3.313SerAsn: 3.313 ± 1.228
1.988SerPro: 1.988 ± 0.71
3.313SerGln: 3.313 ± 0.967
1.988SerArg: 1.988 ± 1.196
3.976SerSer: 3.976 ± 2.906
7.29SerThr: 7.29 ± 5.095
10.603SerVal: 10.603 ± 2.768
1.988SerTrp: 1.988 ± 1.175
0.0SerTyr: 0.0 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.976ThrAla: 3.976 ± 1.799
0.0ThrCys: 0.0 ± 0.0
5.964ThrAsp: 5.964 ± 2.082
2.651ThrGlu: 2.651 ± 0.605
2.651ThrPhe: 2.651 ± 2.35
1.325ThrGly: 1.325 ± 2.047
0.663ThrHis: 0.663 ± 0.429
2.651ThrIle: 2.651 ± 2.061
3.313ThrLys: 3.313 ± 3.84
2.651ThrLeu: 2.651 ± 2.444
1.988ThrMet: 1.988 ± 1.101
5.964ThrAsn: 5.964 ± 2.954
3.313ThrPro: 3.313 ± 1.528
1.988ThrGln: 1.988 ± 0.694
7.952ThrArg: 7.952 ± 2.06
6.627ThrSer: 6.627 ± 3.451
3.976ThrThr: 3.976 ± 1.568
8.615ThrVal: 8.615 ± 3.809
1.325ThrTrp: 1.325 ± 0.714
2.651ThrTyr: 2.651 ± 1.035
0.0ThrXaa: 0.0 ± 0.0
Val
13.254ValAla: 13.254 ± 2.687
0.663ValCys: 0.663 ± 0.429
4.639ValAsp: 4.639 ± 2.728
4.639ValGlu: 4.639 ± 1.876
3.313ValPhe: 3.313 ± 0.787
4.639ValGly: 4.639 ± 2.017
1.988ValHis: 1.988 ± 1.288
1.325ValIle: 1.325 ± 1.424
1.988ValLys: 1.988 ± 0.71
7.29ValLeu: 7.29 ± 2.371
1.988ValMet: 1.988 ± 1.288
5.964ValAsn: 5.964 ± 2.026
2.651ValPro: 2.651 ± 1.185
1.988ValGln: 1.988 ± 0.694
3.976ValArg: 3.976 ± 1.66
8.615ValSer: 8.615 ± 2.452
8.615ValThr: 8.615 ± 3.782
9.278ValVal: 9.278 ± 3.759
0.663ValTrp: 0.663 ± 0.429
3.313ValTyr: 3.313 ± 1.302
0.0ValXaa: 0.0 ± 0.0
Trp
3.313TrpAla: 3.313 ± 1.199
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
3.313TrpGlu: 3.313 ± 0.787
0.0TrpPhe: 0.0 ± 0.0
0.663TrpGly: 0.663 ± 0.429
0.0TrpHis: 0.0 ± 0.0
1.325TrpIle: 1.325 ± 0.714
1.325TrpLys: 1.325 ± 0.714
1.325TrpLeu: 1.325 ± 1.424
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.663TrpGln: 0.663 ± 0.69
2.651TrpArg: 2.651 ± 0.605
1.988TrpSer: 1.988 ± 1.196
0.663TrpThr: 0.663 ± 0.429
0.0TrpVal: 0.0 ± 0.0
1.325TrpTrp: 1.325 ± 0.714
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.313TyrAla: 3.313 ± 1.228
0.663TyrCys: 0.663 ± 0.429
1.325TyrAsp: 1.325 ± 0.859
2.651TyrGlu: 2.651 ± 1.429
0.663TyrPhe: 0.663 ± 0.429
4.639TyrGly: 4.639 ± 1.415
0.0TyrHis: 0.0 ± 0.0
1.988TyrIle: 1.988 ± 1.262
2.651TyrLys: 2.651 ± 0.605
4.639TyrLeu: 4.639 ± 1.494
1.325TyrMet: 1.325 ± 0.714
3.313TyrAsn: 3.313 ± 0.787
0.0TyrPro: 0.0 ± 0.0
1.988TyrGln: 1.988 ± 0.71
3.313TyrArg: 3.313 ± 1.302
0.663TyrSer: 0.663 ± 0.429
2.651TyrThr: 2.651 ± 1.846
1.325TyrVal: 1.325 ± 0.859
0.0TyrTrp: 0.0 ± 0.0
1.325TyrTyr: 1.325 ± 1.211
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.663XaaGly: 0.663 ± 0.429
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1510 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski