Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_433

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.9AlaAla: 7.9 ± 5.784
0.658AlaCys: 0.658 ± 0.703
6.583AlaAsp: 6.583 ± 2.614
2.633AlaGlu: 2.633 ± 1.4
2.633AlaPhe: 2.633 ± 1.434
3.292AlaGly: 3.292 ± 1.729
0.658AlaHis: 0.658 ± 0.48
3.95AlaIle: 3.95 ± 1.316
7.242AlaLys: 7.242 ± 1.772
3.95AlaLeu: 3.95 ± 1.226
1.975AlaMet: 1.975 ± 0.907
3.292AlaAsn: 3.292 ± 2.6
3.292AlaPro: 3.292 ± 0.586
4.608AlaGln: 4.608 ± 1.299
3.292AlaArg: 3.292 ± 1.705
4.608AlaSer: 4.608 ± 3.958
5.267AlaThr: 5.267 ± 1.134
3.292AlaVal: 3.292 ± 0.912
2.633AlaTrp: 2.633 ± 1.195
4.608AlaTyr: 4.608 ± 2.572
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.658CysAsp: 0.658 ± 0.48
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.317CysGly: 1.317 ± 1.257
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.658CysLys: 0.658 ± 0.48
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
1.317CysGln: 1.317 ± 1.257
0.658CysArg: 0.658 ± 0.628
0.0CysSer: 0.0 ± 0.0
1.975CysThr: 1.975 ± 1.35
0.658CysVal: 0.658 ± 0.48
0.0CysTrp: 0.0 ± 0.0
1.317CysTyr: 1.317 ± 1.006
0.0CysXaa: 0.0 ± 0.0
Asp
1.317AspAla: 1.317 ± 0.672
0.658AspCys: 0.658 ± 0.703
0.0AspAsp: 0.0 ± 0.0
7.9AspGlu: 7.9 ± 2.017
1.975AspPhe: 1.975 ± 1.706
1.317AspGly: 1.317 ± 0.598
0.658AspHis: 0.658 ± 0.48
2.633AspIle: 2.633 ± 1.289
0.658AspLys: 0.658 ± 0.852
3.292AspLeu: 3.292 ± 0.813
1.317AspMet: 1.317 ± 0.729
1.975AspAsn: 1.975 ± 0.986
1.317AspPro: 1.317 ± 0.598
0.658AspGln: 0.658 ± 0.48
2.633AspArg: 2.633 ± 0.962
5.267AspSer: 5.267 ± 1.598
0.658AspThr: 0.658 ± 0.48
1.317AspVal: 1.317 ± 0.833
0.658AspTrp: 0.658 ± 0.48
5.267AspTyr: 5.267 ± 2.628
0.0AspXaa: 0.0 ± 0.0
Glu
7.242GluAla: 7.242 ± 1.296
0.0GluCys: 0.0 ± 0.0
2.633GluAsp: 2.633 ± 1.239
5.925GluGlu: 5.925 ± 3.207
2.633GluPhe: 2.633 ± 1.684
3.95GluGly: 3.95 ± 0.984
2.633GluHis: 2.633 ± 1.289
3.292GluIle: 3.292 ± 1.404
10.533GluLys: 10.533 ± 2.988
4.608GluLeu: 4.608 ± 2.931
2.633GluMet: 2.633 ± 2.337
7.9GluAsn: 7.9 ± 2.149
3.292GluPro: 3.292 ± 2.718
7.242GluGln: 7.242 ± 1.246
5.925GluArg: 5.925 ± 2.665
2.633GluSer: 2.633 ± 1.177
4.608GluThr: 4.608 ± 1.299
3.95GluVal: 3.95 ± 1.345
1.317GluTrp: 1.317 ± 0.598
5.925GluTyr: 5.925 ± 2.635
0.0GluXaa: 0.0 ± 0.0
Phe
1.975PheAla: 1.975 ± 1.439
0.0PheCys: 0.0 ± 0.0
1.975PheAsp: 1.975 ± 1.531
1.975PheGlu: 1.975 ± 2.121
1.975PhePhe: 1.975 ± 0.986
3.292PheGly: 3.292 ± 1.24
0.0PheHis: 0.0 ± 0.0
1.975PheIle: 1.975 ± 1.015
1.975PheLys: 1.975 ± 0.883
1.317PheLeu: 1.317 ± 0.833
1.317PheMet: 1.317 ± 1.006
0.658PheAsn: 0.658 ± 0.628
0.658PhePro: 0.658 ± 0.936
0.658PheGln: 0.658 ± 0.48
1.975PheArg: 1.975 ± 1.015
1.975PheSer: 1.975 ± 1.439
3.95PheThr: 3.95 ± 1.125
2.633PheVal: 2.633 ± 1.727
0.658PheTrp: 0.658 ± 0.48
3.292PheTyr: 3.292 ± 1.24
0.0PheXaa: 0.0 ± 0.0
Gly
3.292GlyAla: 3.292 ± 1.777
1.317GlyCys: 1.317 ± 1.006
2.633GlyAsp: 2.633 ± 1.41
7.242GlyGlu: 7.242 ± 1.559
1.317GlyPhe: 1.317 ± 0.812
5.267GlyGly: 5.267 ± 2.244
0.658GlyHis: 0.658 ± 0.703
6.583GlyIle: 6.583 ± 1.402
5.267GlyLys: 5.267 ± 2.591
3.292GlyLeu: 3.292 ± 1.047
0.0GlyMet: 0.0 ± 0.0
0.658GlyAsn: 0.658 ± 0.48
0.0GlyPro: 0.0 ± 0.0
2.633GlyGln: 2.633 ± 1.834
0.658GlyArg: 0.658 ± 0.628
13.167GlySer: 13.167 ± 6.512
3.95GlyThr: 3.95 ± 1.703
0.658GlyVal: 0.658 ± 0.48
1.317GlyTrp: 1.317 ± 0.672
6.583GlyTyr: 6.583 ± 1.67
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
1.317HisAsp: 1.317 ± 0.598
1.317HisGlu: 1.317 ± 0.672
0.0HisPhe: 0.0 ± 0.0
0.658HisGly: 0.658 ± 0.48
0.0HisHis: 0.0 ± 0.0
1.317HisIle: 1.317 ± 0.598
1.975HisLys: 1.975 ± 1.074
0.658HisLeu: 0.658 ± 0.48
0.0HisMet: 0.0 ± 0.0
0.658HisAsn: 0.658 ± 0.628
0.658HisPro: 0.658 ± 0.628
0.658HisGln: 0.658 ± 0.48
0.658HisArg: 0.658 ± 0.703
1.975HisSer: 1.975 ± 0.865
1.317HisThr: 1.317 ± 0.598
0.0HisVal: 0.0 ± 0.0
0.658HisTrp: 0.658 ± 0.48
2.633HisTyr: 2.633 ± 1.195
0.0HisXaa: 0.0 ± 0.0
Ile
1.975IleAla: 1.975 ± 1.439
0.658IleCys: 0.658 ± 0.48
3.95IleAsp: 3.95 ± 2.299
7.242IleGlu: 7.242 ± 3.167
1.317IlePhe: 1.317 ± 0.842
5.925IleGly: 5.925 ± 2.48
0.0IleHis: 0.0 ± 0.0
4.608IleIle: 4.608 ± 3.652
7.9IleLys: 7.9 ± 3.254
5.267IleLeu: 5.267 ± 1.352
1.975IleMet: 1.975 ± 1.849
4.608IleAsn: 4.608 ± 2.744
3.292IlePro: 3.292 ± 1.849
2.633IleGln: 2.633 ± 0.915
1.975IleArg: 1.975 ± 0.656
1.975IleSer: 1.975 ± 0.853
1.975IleThr: 1.975 ± 1.129
2.633IleVal: 2.633 ± 1.919
1.317IleTrp: 1.317 ± 0.959
4.608IleTyr: 4.608 ± 1.494
0.0IleXaa: 0.0 ± 0.0
Lys
5.267LysAla: 5.267 ± 0.862
0.658LysCys: 0.658 ± 0.628
2.633LysAsp: 2.633 ± 1.659
14.483LysGlu: 14.483 ± 5.725
3.292LysPhe: 3.292 ± 1.611
6.583LysGly: 6.583 ± 2.289
1.317LysHis: 1.317 ± 0.598
4.608LysIle: 4.608 ± 1.644
5.925LysLys: 5.925 ± 3.411
3.95LysLeu: 3.95 ± 2.495
0.0LysMet: 0.0 ± 0.0
3.292LysAsn: 3.292 ± 1.311
2.633LysPro: 2.633 ± 0.95
2.633LysGln: 2.633 ± 1.727
3.292LysArg: 3.292 ± 1.201
5.925LysSer: 5.925 ± 2.384
5.925LysThr: 5.925 ± 1.398
0.658LysVal: 0.658 ± 0.628
1.317LysTrp: 1.317 ± 0.842
4.608LysTyr: 4.608 ± 1.851
0.0LysXaa: 0.0 ± 0.0
Leu
3.292LeuAla: 3.292 ± 1.034
0.658LeuCys: 0.658 ± 0.628
1.317LeuAsp: 1.317 ± 0.729
4.608LeuGlu: 4.608 ± 2.565
1.317LeuPhe: 1.317 ± 1.257
3.95LeuGly: 3.95 ± 1.561
0.0LeuHis: 0.0 ± 0.0
3.292LeuIle: 3.292 ± 1.561
7.242LeuLys: 7.242 ± 2.903
1.975LeuLeu: 1.975 ± 2.556
0.658LeuMet: 0.658 ± 0.628
3.95LeuAsn: 3.95 ± 1.482
3.95LeuPro: 3.95 ± 1.581
3.292LeuGln: 3.292 ± 1.219
0.658LeuArg: 0.658 ± 0.48
3.95LeuSer: 3.95 ± 2.34
2.633LeuThr: 2.633 ± 1.195
2.633LeuVal: 2.633 ± 1.371
2.633LeuTrp: 2.633 ± 1.307
1.317LeuTyr: 1.317 ± 0.833
0.0LeuXaa: 0.0 ± 0.0
Met
3.95MetAla: 3.95 ± 2.325
0.0MetCys: 0.0 ± 0.0
3.292MetAsp: 3.292 ± 1.162
0.658MetGlu: 0.658 ± 0.852
1.975MetPhe: 1.975 ± 1.439
1.975MetGly: 1.975 ± 1.35
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
1.975MetLys: 1.975 ± 1.271
1.317MetLeu: 1.317 ± 1.371
1.317MetMet: 1.317 ± 1.102
3.292MetAsn: 3.292 ± 1.721
1.317MetPro: 1.317 ± 0.598
1.317MetGln: 1.317 ± 1.182
1.317MetArg: 1.317 ± 0.842
1.975MetSer: 1.975 ± 1.129
1.317MetThr: 1.317 ± 0.729
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
1.975MetTyr: 1.975 ± 1.242
0.0MetXaa: 0.0 ± 0.0
Asn
5.925AsnAla: 5.925 ± 2.249
0.0AsnCys: 0.0 ± 0.0
4.608AsnAsp: 4.608 ± 1.601
3.95AsnGlu: 3.95 ± 1.284
1.975AsnPhe: 1.975 ± 1.015
3.292AsnGly: 3.292 ± 1.047
1.975AsnHis: 1.975 ± 0.656
5.267AsnIle: 5.267 ± 2.176
3.95AsnLys: 3.95 ± 1.658
4.608AsnLeu: 4.608 ± 1.639
2.633AsnMet: 2.633 ± 1.221
0.658AsnAsn: 0.658 ± 0.628
1.317AsnPro: 1.317 ± 0.762
1.975AsnGln: 1.975 ± 1.271
1.317AsnArg: 1.317 ± 0.598
4.608AsnSer: 4.608 ± 2.591
4.608AsnThr: 4.608 ± 1.447
0.0AsnVal: 0.0 ± 0.0
1.317AsnTrp: 1.317 ± 0.762
2.633AsnTyr: 2.633 ± 1.239
0.0AsnXaa: 0.0 ± 0.0
Pro
1.975ProAla: 1.975 ± 1.561
0.658ProCys: 0.658 ± 0.628
1.317ProAsp: 1.317 ± 0.842
2.633ProGlu: 2.633 ± 1.47
0.658ProPhe: 0.658 ± 0.48
1.975ProGly: 1.975 ± 0.883
0.658ProHis: 0.658 ± 0.628
5.267ProIle: 5.267 ± 1.819
2.633ProLys: 2.633 ± 2.038
2.633ProLeu: 2.633 ± 1.41
1.317ProMet: 1.317 ± 0.833
1.317ProAsn: 1.317 ± 0.833
0.658ProPro: 0.658 ± 0.628
1.975ProGln: 1.975 ± 1.439
0.658ProArg: 0.658 ± 0.48
2.633ProSer: 2.633 ± 0.602
3.292ProThr: 3.292 ± 1.418
2.633ProVal: 2.633 ± 1.919
0.658ProTrp: 0.658 ± 0.48
1.317ProTyr: 1.317 ± 0.598
0.0ProXaa: 0.0 ± 0.0
Gln
3.95GlnAla: 3.95 ± 1.539
0.0GlnCys: 0.0 ± 0.0
1.975GlnAsp: 1.975 ± 1.242
2.633GlnGlu: 2.633 ± 0.867
2.633GlnPhe: 2.633 ± 1.289
2.633GlnGly: 2.633 ± 0.813
0.0GlnHis: 0.0 ± 0.0
0.0GlnIle: 0.0 ± 0.0
1.975GlnLys: 1.975 ± 1.129
3.292GlnLeu: 3.292 ± 1.05
2.633GlnMet: 2.633 ± 0.82
2.633GlnAsn: 2.633 ± 0.602
1.317GlnPro: 1.317 ± 0.959
1.975GlnGln: 1.975 ± 1.074
5.267GlnArg: 5.267 ± 1.614
3.292GlnSer: 3.292 ± 1.232
2.633GlnThr: 2.633 ± 0.813
1.975GlnVal: 1.975 ± 1.074
0.0GlnTrp: 0.0 ± 0.0
1.975GlnTyr: 1.975 ± 1.306
0.0GlnXaa: 0.0 ± 0.0
Arg
1.317ArgAla: 1.317 ± 0.672
0.0ArgCys: 0.0 ± 0.0
1.317ArgAsp: 1.317 ± 0.598
1.317ArgGlu: 1.317 ± 0.762
1.975ArgPhe: 1.975 ± 0.883
2.633ArgGly: 2.633 ± 1.798
1.317ArgHis: 1.317 ± 1.006
2.633ArgIle: 2.633 ± 2.012
2.633ArgLys: 2.633 ± 1.221
2.633ArgLeu: 2.633 ± 0.813
2.633ArgMet: 2.633 ± 1.241
1.317ArgAsn: 1.317 ± 1.257
1.317ArgPro: 1.317 ± 0.598
1.317ArgGln: 1.317 ± 1.006
1.975ArgArg: 1.975 ± 1.315
3.95ArgSer: 3.95 ± 2.231
5.267ArgThr: 5.267 ± 1.559
1.975ArgVal: 1.975 ± 0.986
0.658ArgTrp: 0.658 ± 0.686
1.975ArgTyr: 1.975 ± 0.883
0.0ArgXaa: 0.0 ± 0.0
Ser
11.192SerAla: 11.192 ± 6.729
1.317SerCys: 1.317 ± 0.598
1.317SerAsp: 1.317 ± 1.371
7.242SerGlu: 7.242 ± 2.639
1.317SerPhe: 1.317 ± 0.729
5.267SerGly: 5.267 ± 3.463
1.975SerHis: 1.975 ± 1.271
4.608SerIle: 4.608 ± 1.762
6.583SerLys: 6.583 ± 2.725
1.975SerLeu: 1.975 ± 0.883
1.975SerMet: 1.975 ± 0.945
7.242SerAsn: 7.242 ± 2.832
1.975SerPro: 1.975 ± 1.439
2.633SerGln: 2.633 ± 1.477
3.292SerArg: 3.292 ± 1.05
8.558SerSer: 8.558 ± 8.914
4.608SerThr: 4.608 ± 3.32
3.95SerVal: 3.95 ± 1.633
1.975SerTrp: 1.975 ± 2.057
3.95SerTyr: 3.95 ± 2.612
0.0SerXaa: 0.0 ± 0.0
Thr
5.925ThrAla: 5.925 ± 1.645
0.658ThrCys: 0.658 ± 0.48
2.633ThrAsp: 2.633 ± 1.919
7.242ThrGlu: 7.242 ± 3.088
1.975ThrPhe: 1.975 ± 2.808
3.95ThrGly: 3.95 ± 2.299
0.658ThrHis: 0.658 ± 0.48
7.242ThrIle: 7.242 ± 2.505
3.292ThrLys: 3.292 ± 1.19
3.95ThrLeu: 3.95 ± 1.669
1.317ThrMet: 1.317 ± 1.257
2.633ThrAsn: 2.633 ± 0.813
3.292ThrPro: 3.292 ± 1.446
2.633ThrGln: 2.633 ± 1.34
0.658ThrArg: 0.658 ± 0.48
5.267ThrSer: 5.267 ± 1.844
3.95ThrThr: 3.95 ± 2.192
2.633ThrVal: 2.633 ± 1.669
1.975ThrTrp: 1.975 ± 1.024
3.292ThrTyr: 3.292 ± 0.875
0.0ThrXaa: 0.0 ± 0.0
Val
1.975ValAla: 1.975 ± 0.542
0.0ValCys: 0.0 ± 0.0
0.0ValAsp: 0.0 ± 0.0
1.975ValGlu: 1.975 ± 1.129
0.658ValPhe: 0.658 ± 0.48
1.975ValGly: 1.975 ± 1.531
0.658ValHis: 0.658 ± 0.48
4.608ValIle: 4.608 ± 1.74
1.975ValLys: 1.975 ± 1.531
1.317ValLeu: 1.317 ± 0.959
1.975ValMet: 1.975 ± 0.945
3.95ValAsn: 3.95 ± 1.396
3.292ValPro: 3.292 ± 2.398
0.0ValGln: 0.0 ± 0.0
1.317ValArg: 1.317 ± 0.598
2.633ValSer: 2.633 ± 1.477
3.292ValThr: 3.292 ± 1.162
0.658ValVal: 0.658 ± 0.936
0.658ValTrp: 0.658 ± 0.48
0.658ValTyr: 0.658 ± 0.703
0.0ValXaa: 0.0 ± 0.0
Trp
2.633TrpAla: 2.633 ± 0.602
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.975TrpGlu: 1.975 ± 0.945
0.658TrpPhe: 0.658 ± 0.48
1.975TrpGly: 1.975 ± 0.542
0.658TrpHis: 0.658 ± 0.48
0.658TrpIle: 0.658 ± 0.48
0.658TrpLys: 0.658 ± 0.852
0.658TrpLeu: 0.658 ± 0.48
0.0TrpMet: 0.0 ± 0.0
1.317TrpAsn: 1.317 ± 0.598
0.0TrpPro: 0.0 ± 0.0
0.658TrpGln: 0.658 ± 0.48
0.658TrpArg: 0.658 ± 0.936
1.975TrpSer: 1.975 ± 1.043
3.292TrpThr: 3.292 ± 1.777
0.658TrpVal: 0.658 ± 0.852
0.0TrpTrp: 0.0 ± 0.0
1.317TrpTyr: 1.317 ± 1.371
0.0TrpXaa: 0.0 ± 0.0
Tyr
5.267TyrAla: 5.267 ± 1.995
1.317TyrCys: 1.317 ± 0.598
1.317TyrAsp: 1.317 ± 0.762
6.583TyrGlu: 6.583 ± 1.072
3.95TyrPhe: 3.95 ± 1.793
5.267TyrGly: 5.267 ± 2.839
2.633TyrHis: 2.633 ± 1.195
3.292TyrIle: 3.292 ± 1.846
3.95TyrLys: 3.95 ± 1.194
2.633TyrLeu: 2.633 ± 0.915
2.633TyrMet: 2.633 ± 0.981
5.267TyrAsn: 5.267 ± 2.213
3.292TyrPro: 3.292 ± 1.365
1.975TyrGln: 1.975 ± 0.945
1.975TyrArg: 1.975 ± 0.853
6.583TyrSer: 6.583 ± 3.184
0.658TyrThr: 0.658 ± 0.48
0.658TyrVal: 0.658 ± 0.628
0.0TyrTrp: 0.0 ± 0.0
3.292TyrTyr: 3.292 ± 1.047
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1520 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski