Rodentibacter trehalosifermentans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Rodentibacter

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2455 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1V3J6N8|A0A1V3J6N8_9PAST Restriction endonuclease subunit M OS=Rodentibacter trehalosifermentans OX=1908263 GN=BKK52_01305 PE=3 SV=1
MM1 pKa = 7.24TKK3 pKa = 10.45EE4 pKa = 3.76NNGWISVIDD13 pKa = 3.85RR14 pKa = 11.84LPEE17 pKa = 3.92EE18 pKa = 4.48GVDD21 pKa = 3.59VIVYY25 pKa = 10.28SDD27 pKa = 3.45YY28 pKa = 11.72AKK30 pKa = 10.81AVFVAWLSCEE40 pKa = 4.73DD41 pKa = 3.57NTCFTDD47 pKa = 3.31EE48 pKa = 4.34NGDD51 pKa = 3.51YY52 pKa = 11.45GLIDD56 pKa = 6.01EE57 pKa = 4.62ITHH60 pKa = 5.85WQPLPEE66 pKa = 4.71PPKK69 pKa = 10.68EE70 pKa = 4.08DD71 pKa = 3.11

Molecular weight: 8.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1V3ISE4|A0A1V3ISE4_9PAST Uncharacterized protein (Fragment) OS=Rodentibacter trehalosifermentans OX=1908263 GN=BKK52_12965 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.68RR12 pKa = 11.84NRR14 pKa = 11.84THH16 pKa = 7.28GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.15GRR39 pKa = 11.84KK40 pKa = 8.87SLSAA44 pKa = 3.86

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2455

0

2455

733808

39

2338

298.9

33.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.34 ± 0.055

0.978 ± 0.019

4.933 ± 0.039

6.525 ± 0.05

4.481 ± 0.044

6.724 ± 0.05

2.068 ± 0.022

6.935 ± 0.051

6.361 ± 0.051

10.413 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.448 ± 0.024

4.868 ± 0.043

3.773 ± 0.03

4.681 ± 0.046

4.475 ± 0.043

5.756 ± 0.04

5.264 ± 0.039

6.532 ± 0.043

1.196 ± 0.024

3.249 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski