Pigmentiphaga aceris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pigmentiphaga

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5191 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C0B527|A0A5C0B527_9BURK ABC transporter substrate-binding protein OS=Pigmentiphaga aceris OX=1940612 GN=FXN63_08210 PE=4 SV=1
MM1 pKa = 8.67SMIYY5 pKa = 9.72TYY7 pKa = 11.72ANAPASAADD16 pKa = 3.46IQAMCEE22 pKa = 4.05QLGLPATCWLGGFWAAHH39 pKa = 5.7NGAMLNDD46 pKa = 3.98LVVIYY51 pKa = 8.76ATDD54 pKa = 5.1DD55 pKa = 3.15IAEE58 pKa = 4.32RR59 pKa = 11.84NQTYY63 pKa = 10.67DD64 pKa = 2.88VGTSFPDD71 pKa = 3.49HH72 pKa = 6.85VSVGDD77 pKa = 3.77DD78 pKa = 3.08SGGRR82 pKa = 11.84LILMPKK88 pKa = 9.55SGAPRR93 pKa = 11.84FHH95 pKa = 7.69LLDD98 pKa = 4.34AGDD101 pKa = 4.45PFIEE105 pKa = 4.85DD106 pKa = 3.3ADD108 pKa = 4.0VFDD111 pKa = 4.34SLEE114 pKa = 3.97ALVAYY119 pKa = 9.13VVSEE123 pKa = 4.21DD124 pKa = 3.26

Molecular weight: 13.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C0B2N7|A0A5C0B2N7_9BURK Dehydratase OS=Pigmentiphaga aceris OX=1940612 GN=FXN63_20615 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.06QPSVTRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.0RR14 pKa = 11.84THH16 pKa = 5.76GFRR19 pKa = 11.84VRR21 pKa = 11.84MKK23 pKa = 9.39TRR25 pKa = 11.84GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5191

0

5191

1790400

21

2912

344.9

37.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.613 ± 0.044

0.786 ± 0.011

5.58 ± 0.027

4.85 ± 0.032

3.514 ± 0.018

8.179 ± 0.039

2.133 ± 0.017

4.743 ± 0.024

2.973 ± 0.024

10.673 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.436 ± 0.018

2.761 ± 0.022

5.132 ± 0.024

3.841 ± 0.022

6.763 ± 0.038

5.893 ± 0.025

5.59 ± 0.033

7.884 ± 0.029

1.397 ± 0.016

2.259 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski