Mycobacteroides franklinii

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Mycobacteriaceae;

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4855 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R8R8T9|A0A4R8R8T9_9MYCO Putative HTH-type transcriptional regulator YybR OS=Mycobacteroides franklinii OX=948102 GN=yybR_2 PE=4 SV=1
MM1 pKa = 7.21VSPVVRR7 pKa = 11.84IALMPLWLAAIAASLSLPVVAQAAPMLPVGGEE39 pKa = 4.31SPSQTISDD47 pKa = 4.67LEE49 pKa = 4.27DD50 pKa = 2.88EE51 pKa = 5.41GYY53 pKa = 10.66DD54 pKa = 3.5VQINYY59 pKa = 9.37VMGNSNTPLDD69 pKa = 3.97MCRR72 pKa = 11.84VLAVHH77 pKa = 6.35NPNRR81 pKa = 11.84SGKK84 pKa = 9.41PVDD87 pKa = 3.65TFTTVYY93 pKa = 10.98VDD95 pKa = 3.59ISCPDD100 pKa = 3.62FWQDD104 pKa = 3.91DD105 pKa = 3.66

Molecular weight: 11.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R8R4L7|A0A4R8R4L7_9MYCO Uncharacterized protein OS=Mycobacteroides franklinii OX=948102 GN=CCUG63697_04333 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.72HH17 pKa = 5.63RR18 pKa = 11.84KK19 pKa = 7.56LLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4855

0

4855

1535828

29

6256

316.3

34.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.446 ± 0.043

0.787 ± 0.01

6.055 ± 0.029

5.257 ± 0.03

3.121 ± 0.022

8.755 ± 0.033

2.217 ± 0.018

4.601 ± 0.022

2.469 ± 0.026

9.806 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.08 ± 0.016

2.404 ± 0.018

5.694 ± 0.027

3.208 ± 0.019

6.913 ± 0.036

5.779 ± 0.024

6.093 ± 0.019

8.583 ± 0.032

1.518 ± 0.015

2.215 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski