Penicillium patulum (Penicillium griseofulvum)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Penicillium

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9628 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A135M0J1|A0A135M0J1_PENPA Uncharacterized protein OS=Penicillium patulum OX=5078 GN=PGRI_078720 PE=4 SV=1
MM1 pKa = 7.43ATLDD5 pKa = 4.37CGTDD9 pKa = 3.28ADD11 pKa = 4.56GSDD14 pKa = 3.21NGSDD18 pKa = 3.24EE19 pKa = 4.45KK20 pKa = 11.03EE21 pKa = 4.53GYY23 pKa = 10.02FSAEE27 pKa = 4.15EE28 pKa = 3.92FLSPSPYY35 pKa = 10.05LRR37 pKa = 11.84PATPQLYY44 pKa = 9.66YY45 pKa = 9.8EE46 pKa = 4.42QHH48 pKa = 6.0PAWWPVSDD56 pKa = 5.55DD57 pKa = 3.7NNFDD61 pKa = 3.66LTRR64 pKa = 11.84TCDD67 pKa = 3.4PVDD70 pKa = 3.8PVSMRR75 pKa = 11.84RR76 pKa = 11.84DD77 pKa = 3.29YY78 pKa = 10.76RR79 pKa = 11.84ARR81 pKa = 11.84RR82 pKa = 11.84PKK84 pKa = 8.12TTPSQYY90 pKa = 11.08SSDD93 pKa = 3.77DD94 pKa = 3.18TDD96 pKa = 4.4SFVSCEE102 pKa = 3.93EE103 pKa = 4.07YY104 pKa = 10.89LDD106 pKa = 4.73EE107 pKa = 5.47EE108 pKa = 4.47NPDD111 pKa = 3.77DD112 pKa = 5.72KK113 pKa = 11.26DD114 pKa = 3.64YY115 pKa = 11.39CSRR118 pKa = 11.84NGEE121 pKa = 3.92YY122 pKa = 10.74DD123 pKa = 3.2LL124 pKa = 5.98

Molecular weight: 14.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A135LUK8|A0A135LUK8_PENPA Uncharacterized protein OS=Penicillium patulum OX=5078 GN=PGRI_079010 PE=4 SV=1
MM1 pKa = 6.97FCLRR5 pKa = 11.84ARR7 pKa = 11.84AVPSTFRR14 pKa = 11.84ATTSAMRR21 pKa = 11.84TSMSRR26 pKa = 11.84FAQIPQQPSTPSTMLSSRR44 pKa = 11.84SFSSLLSTPTRR55 pKa = 11.84FQPSRR60 pKa = 11.84TLGARR65 pKa = 11.84LSSPITATASAFSPLSSLLSQKK87 pKa = 9.18TPSQSRR93 pKa = 11.84SFSASASLGVRR104 pKa = 11.84RR105 pKa = 11.84VTFRR109 pKa = 11.84PSRR112 pKa = 11.84RR113 pKa = 11.84VQKK116 pKa = 10.3RR117 pKa = 11.84RR118 pKa = 11.84HH119 pKa = 5.75GYY121 pKa = 9.09LARR124 pKa = 11.84KK125 pKa = 9.08KK126 pKa = 10.39DD127 pKa = 3.6RR128 pKa = 11.84NGRR131 pKa = 11.84KK132 pKa = 6.83TLIRR136 pKa = 11.84RR137 pKa = 11.84TLKK140 pKa = 10.34GRR142 pKa = 11.84KK143 pKa = 7.8EE144 pKa = 4.02LSWW147 pKa = 4.66

Molecular weight: 16.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9628

0

9628

5009552

66

7334

520.3

57.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.392 ± 0.018

1.175 ± 0.009

5.735 ± 0.017

6.212 ± 0.029

3.802 ± 0.017

6.756 ± 0.023

2.412 ± 0.011

5.169 ± 0.019

4.74 ± 0.019

8.95 ± 0.029

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.267 ± 0.009

3.765 ± 0.012

6.043 ± 0.03

4.023 ± 0.016

5.884 ± 0.022

8.284 ± 0.028

5.988 ± 0.017

6.144 ± 0.018

1.463 ± 0.01

2.797 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski