Campylobacter avium LMG 24591

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter; Campylobacter avium

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1636 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A222MUV8|A0A222MUV8_9PROT Tryptophan--tRNA ligase OS=Campylobacter avium LMG 24591 OX=522484 GN=trpS PE=3 SV=1
MM1 pKa = 7.24SVAVIYY7 pKa = 10.24GSSMGNTEE15 pKa = 3.78GAANLIAEE23 pKa = 4.6KK24 pKa = 10.75LGVSDD29 pKa = 4.3VLNISDD35 pKa = 4.32IDD37 pKa = 3.57AAKK40 pKa = 10.32INSYY44 pKa = 11.18DD45 pKa = 3.6KK46 pKa = 11.19LIVGSSTWGSGDD58 pKa = 4.97LQDD61 pKa = 5.35DD62 pKa = 3.26WDD64 pKa = 4.37AFDD67 pKa = 5.53FSGLKK72 pKa = 10.3LDD74 pKa = 4.26GKK76 pKa = 8.21TVAVFGMGDD85 pKa = 3.54SEE87 pKa = 5.1SYY89 pKa = 11.34SDD91 pKa = 3.87TYY93 pKa = 10.59CNAMGKK99 pKa = 9.56LAEE102 pKa = 4.41KK103 pKa = 10.24LQAAGAKK110 pKa = 9.96LVGQVSTDD118 pKa = 3.19GYY120 pKa = 10.55SYY122 pKa = 10.64EE123 pKa = 4.12SSEE126 pKa = 4.06AVVDD130 pKa = 4.43GKK132 pKa = 11.02FVGLALDD139 pKa = 4.09NDD141 pKa = 3.86NQEE144 pKa = 4.59DD145 pKa = 3.92LTEE148 pKa = 3.96EE149 pKa = 4.75RR150 pKa = 11.84ISNWVEE156 pKa = 3.56QIKK159 pKa = 11.03ADD161 pKa = 4.02FNN163 pKa = 4.17

Molecular weight: 17.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A222MZH3|A0A222MZH3_9PROT Exonuclease V helicase AddB OS=Campylobacter avium LMG 24591 OX=522484 GN=addB PE=4 SV=1
MM1 pKa = 7.59AKK3 pKa = 10.37KK4 pKa = 10.94SMIAKK9 pKa = 9.61AARR12 pKa = 11.84KK13 pKa = 9.51AKK15 pKa = 10.14FSVRR19 pKa = 11.84AYY21 pKa = 8.5TRR23 pKa = 11.84CQICGRR29 pKa = 11.84PHH31 pKa = 5.56SVYY34 pKa = 10.37RR35 pKa = 11.84DD36 pKa = 3.43FGICRR41 pKa = 11.84VCLRR45 pKa = 11.84KK46 pKa = 8.66MANEE50 pKa = 3.81GLIPGLKK57 pKa = 8.97KK58 pKa = 10.89ASWW61 pKa = 3.28

Molecular weight: 6.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1636

0

1636

522044

37

2497

319.1

36.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.972 ± 0.055

1.202 ± 0.026

5.732 ± 0.045

6.906 ± 0.066

6.022 ± 0.064

5.14 ± 0.061

1.539 ± 0.021

7.964 ± 0.054

9.751 ± 0.077

11.209 ± 0.073

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.103 ± 0.026

5.854 ± 0.055

2.484 ± 0.031

2.897 ± 0.032

3.224 ± 0.033

7.297 ± 0.046

3.879 ± 0.044

5.389 ± 0.045

0.568 ± 0.016

3.867 ± 0.04
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski