Extensimonas vulgaris

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Extensimonas

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2789 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A369AFR7|A0A369AFR7_9BURK Type IV secretory system conjugative DNA transfer VirD4/TraG family protein (Fragment) OS=Extensimonas vulgaris OX=1031594 GN=DFR45_11724 PE=4 SV=1
MM1 pKa = 7.25SAVAEE6 pKa = 4.48NISTEE11 pKa = 3.97MPAPINFTDD20 pKa = 3.42SAAAKK25 pKa = 9.27VAEE28 pKa = 5.01LIAEE32 pKa = 4.35EE33 pKa = 4.62GNPDD37 pKa = 2.99LKK39 pKa = 11.13LRR41 pKa = 11.84VFVQGGGCSGFQYY54 pKa = 10.9GFTFDD59 pKa = 3.8EE60 pKa = 4.88VVNEE64 pKa = 4.95DD65 pKa = 3.69DD66 pKa = 3.27TTMVKK71 pKa = 10.58NGVTLLIDD79 pKa = 3.64AMSYY83 pKa = 10.32QYY85 pKa = 11.5LVGAEE90 pKa = 3.79IDD92 pKa = 3.91YY93 pKa = 11.36KK94 pKa = 11.19EE95 pKa = 4.67DD96 pKa = 3.23LQGAQFVIRR105 pKa = 11.84NPNATSTCGCGSSFSVV121 pKa = 3.54

Molecular weight: 12.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A369AIX7|A0A369AIX7_9BURK Uncharacterized protein OS=Extensimonas vulgaris OX=1031594 GN=DFR45_109109 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.25QPSKK9 pKa = 7.79TRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.79GFLVRR21 pKa = 11.84MKK23 pKa = 9.1TRR25 pKa = 11.84SGRR28 pKa = 11.84AIINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.62GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2789

0

2789

930153

28

2184

333.5

36.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.724 ± 0.074

0.982 ± 0.015

4.891 ± 0.032

5.391 ± 0.043

3.388 ± 0.028

8.087 ± 0.046

2.385 ± 0.022

4.237 ± 0.038

3.122 ± 0.042

11.015 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.342 ± 0.021

2.373 ± 0.031

5.545 ± 0.034

4.587 ± 0.034

7.022 ± 0.041

4.821 ± 0.031

4.967 ± 0.032

7.366 ± 0.041

1.501 ± 0.024

2.253 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski