Wenling triplecross lizardfish paramyxovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Metaparamyxovirinae; Synodonvirus; Synodus synodonvirus

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P1GNG5|A0A2P1GNG5_9MONO RNA-directed RNA polymerase L OS=Wenling triplecross lizardfish paramyxovirus OX=2116451 PE=3 SV=1
MM1 pKa = 7.32KK2 pKa = 10.29RR3 pKa = 11.84VLDD6 pKa = 3.71WVHH9 pKa = 6.34QKK11 pKa = 7.91MARR14 pKa = 11.84KK15 pKa = 9.49GLDD18 pKa = 3.89PINPTIKK25 pKa = 10.09VGRR28 pKa = 11.84DD29 pKa = 3.2GTEE32 pKa = 3.43VDD34 pKa = 3.44QGLAIYY40 pKa = 9.6IARR43 pKa = 11.84VTVSILAIILLTVLLVTPTVTGLFQVFDD71 pKa = 4.07SSASEE76 pKa = 3.87QSHH79 pKa = 7.37PIMDD83 pKa = 5.11LLNDD87 pKa = 3.66EE88 pKa = 4.7VLPPLRR94 pKa = 11.84NTHH97 pKa = 6.59ALLEE101 pKa = 4.5EE102 pKa = 4.36DD103 pKa = 3.25TAPRR107 pKa = 11.84VRR109 pKa = 11.84SIQTAVEE116 pKa = 3.69LRR118 pKa = 11.84IPGDD122 pKa = 3.61LKK124 pKa = 11.22SATQQILHH132 pKa = 7.31AIKK135 pKa = 9.08DD136 pKa = 3.8TCVGGDD142 pKa = 3.46GGGTGPAPSCPPEE155 pKa = 4.43GVLPQHH161 pKa = 6.72HH162 pKa = 6.63SAFKK166 pKa = 10.47PIDD169 pKa = 4.07PDD171 pKa = 3.78SFTPCATGKK180 pKa = 8.35PTFSGSPAASSSIGSFPWISSGTQDD205 pKa = 3.24TPKK208 pKa = 10.44ISMTMSSSYY217 pKa = 11.01LGFYY221 pKa = 9.57ATDD224 pKa = 3.54TYY226 pKa = 10.71ITTGQNKK233 pKa = 9.61RR234 pKa = 11.84SVSVIGLGRR243 pKa = 11.84LTVTEE248 pKa = 4.85DD249 pKa = 3.27GRR251 pKa = 11.84SSAVVTEE258 pKa = 4.64AEE260 pKa = 4.78PIHH263 pKa = 6.38HH264 pKa = 6.9SSLIGYY270 pKa = 8.77QSTGTGITGTVSFFRR285 pKa = 11.84TTGSEE290 pKa = 4.08DD291 pKa = 3.28TADD294 pKa = 3.82AQDD297 pKa = 3.37VGIRR301 pKa = 11.84SHH303 pKa = 6.24TLLVMRR309 pKa = 11.84RR310 pKa = 11.84NRR312 pKa = 11.84KK313 pKa = 9.08LDD315 pKa = 3.31TYY317 pKa = 10.16VYY319 pKa = 10.32EE320 pKa = 4.54GGEE323 pKa = 3.97IQGGDD328 pKa = 4.39MYY330 pKa = 11.37MMASPLSGQGTMVGDD345 pKa = 3.72EE346 pKa = 4.31MVLLGYY352 pKa = 10.07AVPVTNYY359 pKa = 10.0AGPVWCPNTFCNTQTMEE376 pKa = 3.91ACKK379 pKa = 10.14NASGTIRR386 pKa = 11.84FPGSSTGLAVVMVRR400 pKa = 11.84YY401 pKa = 8.7MIQDD405 pKa = 3.66LDD407 pKa = 3.81KK408 pKa = 11.61DD409 pKa = 3.88GFKK412 pKa = 10.83PKK414 pKa = 9.14ITIHH418 pKa = 5.28MLNRR422 pKa = 11.84EE423 pKa = 4.02QWPIPGPYY431 pKa = 9.71HH432 pKa = 5.82LTSGTKK438 pKa = 9.73GLFISVYY445 pKa = 7.86SWGWYY450 pKa = 6.75GHH452 pKa = 6.1PVSGEE457 pKa = 3.8INRR460 pKa = 11.84ATWDD464 pKa = 3.3MRR466 pKa = 11.84SIRR469 pKa = 11.84LVYY472 pKa = 10.54ALLWPDD478 pKa = 3.48LPEE481 pKa = 4.45TEE483 pKa = 4.5GKK485 pKa = 10.77CYY487 pKa = 10.5TNLANPCPRR496 pKa = 11.84ACTIGSTRR504 pKa = 11.84IGSGIPLTFTGQLSAWLTISADD526 pKa = 3.42GGATRR531 pKa = 11.84LKK533 pKa = 10.63PEE535 pKa = 4.0VAVSYY540 pKa = 10.81SDD542 pKa = 3.74PSYY545 pKa = 11.02HH546 pKa = 7.24DD547 pKa = 3.68LVEE550 pKa = 3.83RR551 pKa = 11.84TYY553 pKa = 10.69PYY555 pKa = 7.96TTAATFTAVEE565 pKa = 4.17GSITCFMVSGLPQCITLIEE584 pKa = 4.68GDD586 pKa = 3.54SSAYY590 pKa = 8.52ATNLQTYY597 pKa = 7.43NLWSLPIDD605 pKa = 4.1CPSTRR610 pKa = 11.84NLTLTTNTTSPP621 pKa = 3.51

Molecular weight: 66.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P1GMY6|A0A2P1GMY6_9MONO Nucleocapsid protein OS=Wenling triplecross lizardfish paramyxovirus OX=2116451 PE=3 SV=1
MM1 pKa = 7.33SGKK4 pKa = 9.72SAPLWDD10 pKa = 4.45GCWSGGGCRR19 pKa = 11.84DD20 pKa = 3.65NIEE23 pKa = 4.04IPKK26 pKa = 9.85PDD28 pKa = 3.75IEE30 pKa = 4.95KK31 pKa = 10.76GPIPITYY38 pKa = 9.07QVPVPSDD45 pKa = 3.53PGNKK49 pKa = 10.2LITQLTLFGFIEE61 pKa = 4.28YY62 pKa = 10.31KK63 pKa = 10.88YY64 pKa = 9.63MSKK67 pKa = 10.83NSGGEE72 pKa = 3.8KK73 pKa = 9.97KK74 pKa = 10.53GVSRR78 pKa = 11.84IILPCSMPRR87 pKa = 11.84GDD89 pKa = 4.54PDD91 pKa = 3.3IAQMSHH97 pKa = 7.22DD98 pKa = 4.39LSQIEE103 pKa = 3.93ISVIRR108 pKa = 11.84RR109 pKa = 11.84PRR111 pKa = 11.84AIEE114 pKa = 4.29SIGFCADD121 pKa = 3.4SVPDD125 pKa = 3.88SLSEE129 pKa = 4.05HH130 pKa = 6.81LGFLLNGMGFPAYY143 pKa = 9.35KK144 pKa = 10.4VSTGVDD150 pKa = 3.22KK151 pKa = 11.01MPASSKK157 pKa = 10.46YY158 pKa = 10.76KK159 pKa = 9.43FIIWAGVLTALSGPGGYY176 pKa = 9.15VVPIRR181 pKa = 11.84RR182 pKa = 11.84MIGGVAKK189 pKa = 10.25NRR191 pKa = 11.84PSGPEE196 pKa = 3.37VKK198 pKa = 9.63MSLKK202 pKa = 9.08ITLKK206 pKa = 9.94TSFDD210 pKa = 3.45IKK212 pKa = 10.94ALAINAEE219 pKa = 4.17KK220 pKa = 10.63CDD222 pKa = 3.95DD223 pKa = 4.65GGWSTDD229 pKa = 2.89VLLYY233 pKa = 10.42IGTISRR239 pKa = 11.84RR240 pKa = 11.84NGRR243 pKa = 11.84PVDD246 pKa = 3.38TEE248 pKa = 3.97YY249 pKa = 11.56AKK251 pKa = 11.07NFASGLGFKK260 pKa = 10.54LGLGSVGGVSIHH272 pKa = 5.32VHH274 pKa = 4.57ATGLKK279 pKa = 8.82WKK281 pKa = 10.52ASLNKK286 pKa = 8.12TTGGKK291 pKa = 10.23KK292 pKa = 10.19NICFPLAEE300 pKa = 4.26VAPVLNRR307 pKa = 11.84VLACRR312 pKa = 11.84DD313 pKa = 3.28TAIIDD318 pKa = 4.21AEE320 pKa = 4.26ICFQATDD327 pKa = 3.43MRR329 pKa = 11.84DD330 pKa = 3.36VRR332 pKa = 11.84EE333 pKa = 4.29TTSVVHH339 pKa = 6.19TLPKK343 pKa = 10.57DD344 pKa = 3.73VIVVNLSHH352 pKa = 7.14

Molecular weight: 37.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

5064

118

2180

723.4

80.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.385 ± 0.889

1.54 ± 0.292

6.319 ± 0.465

5.569 ± 0.672

2.942 ± 0.208

6.754 ± 0.776

2.31 ± 0.34

7.366 ± 0.556

4.976 ± 0.514

9.36 ± 0.639

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.16 ± 0.229

3.752 ± 0.26

4.562 ± 0.502

3.456 ± 0.437

5.766 ± 0.474

7.721 ± 0.431

6.991 ± 0.747

6.062 ± 0.419

1.106 ± 0.211

2.903 ± 0.411
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski