Amino acid dipepetide frequency for Wenling triplecross lizardfish paramyxovirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.728AlaAla: 5.728 ± 1.202
1.58AlaCys: 1.58 ± 0.414
3.358AlaAsp: 3.358 ± 1.155
4.543AlaGlu: 4.543 ± 0.761
1.58AlaPhe: 1.58 ± 0.632
6.123AlaGly: 6.123 ± 1.742
2.173AlaHis: 2.173 ± 0.775
6.123AlaIle: 6.123 ± 1.073
3.16AlaLys: 3.16 ± 0.655
7.11AlaLeu: 7.11 ± 1.022
0.988AlaMet: 0.988 ± 0.308
2.963AlaAsn: 2.963 ± 0.686
2.765AlaPro: 2.765 ± 0.614
4.148AlaGln: 4.148 ± 1.267
5.728AlaArg: 5.728 ± 1.121
4.345AlaSer: 4.345 ± 0.887
5.135AlaThr: 5.135 ± 1.594
4.74AlaVal: 4.74 ± 1.43
0.79AlaTrp: 0.79 ± 0.393
0.79AlaTyr: 0.79 ± 0.277
0.0AlaXaa: 0.0 ± 0.0
Cys
1.185CysAla: 1.185 ± 0.251
0.593CysCys: 0.593 ± 0.373
1.185CysAsp: 1.185 ± 0.565
0.79CysGlu: 0.79 ± 0.37
0.593CysPhe: 0.593 ± 0.557
0.198CysGly: 0.198 ± 0.124
0.593CysHis: 0.593 ± 0.373
1.185CysIle: 1.185 ± 0.363
0.79CysLys: 0.79 ± 0.231
0.395CysLeu: 0.395 ± 0.173
0.0CysMet: 0.0 ± 0.0
0.395CysAsn: 0.395 ± 0.183
1.58CysPro: 1.58 ± 0.848
0.395CysGln: 0.395 ± 0.195
1.383CysArg: 1.383 ± 0.411
0.988CysSer: 0.988 ± 0.396
0.988CysThr: 0.988 ± 0.372
1.185CysVal: 1.185 ± 0.629
0.198CysTrp: 0.198 ± 0.245
0.79CysTyr: 0.79 ± 0.211
0.0CysXaa: 0.0 ± 0.0
Asp
3.753AspAla: 3.753 ± 1.826
0.395AspCys: 0.395 ± 0.183
4.543AspAsp: 4.543 ± 1.33
3.555AspGlu: 3.555 ± 0.52
1.383AspPhe: 1.383 ± 0.512
3.358AspGly: 3.358 ± 0.83
0.79AspHis: 0.79 ± 0.25
4.148AspIle: 4.148 ± 0.93
3.555AspLys: 3.555 ± 0.933
8.295AspLeu: 8.295 ± 1.084
2.568AspMet: 2.568 ± 0.433
1.383AspAsn: 1.383 ± 0.432
4.938AspPro: 4.938 ± 0.942
2.765AspGln: 2.765 ± 0.657
3.358AspArg: 3.358 ± 0.986
4.345AspSer: 4.345 ± 0.488
3.753AspThr: 3.753 ± 1.184
3.555AspVal: 3.555 ± 0.495
0.79AspTrp: 0.79 ± 0.325
1.975AspTyr: 1.975 ± 0.451
0.0AspXaa: 0.0 ± 0.0
Glu
5.135GluAla: 5.135 ± 0.784
0.395GluCys: 0.395 ± 0.203
3.95GluAsp: 3.95 ± 1.006
4.148GluGlu: 4.148 ± 1.289
1.383GluPhe: 1.383 ± 0.561
4.345GluGly: 4.345 ± 0.725
1.185GluHis: 1.185 ± 0.389
4.938GluIle: 4.938 ± 1.696
3.358GluLys: 3.358 ± 0.968
4.938GluLeu: 4.938 ± 1.683
1.185GluMet: 1.185 ± 0.349
0.79GluAsn: 0.79 ± 0.245
2.173GluPro: 2.173 ± 0.543
1.58GluGln: 1.58 ± 0.626
2.765GluArg: 2.765 ± 0.751
3.95GluSer: 3.95 ± 1.02
3.555GluThr: 3.555 ± 0.972
2.963GluVal: 2.963 ± 0.61
0.593GluTrp: 0.593 ± 0.218
2.37GluTyr: 2.37 ± 0.489
0.0GluXaa: 0.0 ± 0.0
Phe
1.58PheAla: 1.58 ± 0.741
0.988PheCys: 0.988 ± 0.321
1.778PheAsp: 1.778 ± 0.536
1.58PheGlu: 1.58 ± 0.576
1.58PhePhe: 1.58 ± 0.481
1.383PheGly: 1.383 ± 0.557
0.593PheHis: 0.593 ± 0.373
1.778PheIle: 1.778 ± 0.468
2.37PheLys: 2.37 ± 0.469
1.778PheLeu: 1.778 ± 0.382
1.185PheMet: 1.185 ± 0.345
1.185PheAsn: 1.185 ± 0.561
1.58PhePro: 1.58 ± 0.56
1.383PheGln: 1.383 ± 0.209
1.185PheArg: 1.185 ± 0.411
2.765PheSer: 2.765 ± 0.568
2.568PheThr: 2.568 ± 0.467
1.185PheVal: 1.185 ± 0.236
0.79PheTrp: 0.79 ± 0.498
0.198PheTyr: 0.198 ± 0.209
0.0PheXaa: 0.0 ± 0.0
Gly
3.753GlyAla: 3.753 ± 1.0
0.79GlyCys: 0.79 ± 0.446
4.543GlyAsp: 4.543 ± 0.74
2.963GlyGlu: 2.963 ± 0.646
2.963GlyPhe: 2.963 ± 1.203
4.938GlyGly: 4.938 ± 2.289
1.975GlyHis: 1.975 ± 0.648
3.95GlyIle: 3.95 ± 0.606
3.16GlyLys: 3.16 ± 0.478
6.913GlyLeu: 6.913 ± 0.773
1.58GlyMet: 1.58 ± 0.316
1.975GlyAsn: 1.975 ± 0.699
2.765GlyPro: 2.765 ± 0.998
2.568GlyGln: 2.568 ± 0.862
3.95GlyArg: 3.95 ± 0.913
5.728GlySer: 5.728 ± 0.914
3.95GlyThr: 3.95 ± 1.392
5.728GlyVal: 5.728 ± 2.148
0.395GlyTrp: 0.395 ± 0.342
2.963GlyTyr: 2.963 ± 0.241
0.0GlyXaa: 0.0 ± 0.0
His
1.975HisAla: 1.975 ± 0.407
0.593HisCys: 0.593 ± 0.373
1.975HisAsp: 1.975 ± 0.425
0.79HisGlu: 0.79 ± 0.338
0.395HisPhe: 0.395 ± 0.203
0.593HisGly: 0.593 ± 0.271
0.79HisHis: 0.79 ± 0.366
1.778HisIle: 1.778 ± 0.5
1.185HisLys: 1.185 ± 0.401
2.568HisLeu: 2.568 ± 0.61
0.79HisMet: 0.79 ± 0.277
0.988HisAsn: 0.988 ± 0.26
1.383HisPro: 1.383 ± 0.36
0.79HisGln: 0.79 ± 0.325
1.383HisArg: 1.383 ± 0.366
1.778HisSer: 1.778 ± 0.254
1.975HisThr: 1.975 ± 0.387
0.988HisVal: 0.988 ± 0.301
0.0HisTrp: 0.0 ± 0.0
0.395HisTyr: 0.395 ± 0.249
0.0HisXaa: 0.0 ± 0.0
Ile
5.135IleAla: 5.135 ± 1.592
1.383IleCys: 1.383 ± 0.49
3.16IleAsp: 3.16 ± 0.555
4.74IleGlu: 4.74 ± 1.443
1.778IlePhe: 1.778 ± 0.566
3.16IleGly: 3.16 ± 1.045
3.555IleHis: 3.555 ± 0.516
5.333IleIle: 5.333 ± 1.672
2.568IleLys: 2.568 ± 0.499
6.913IleLeu: 6.913 ± 1.137
2.568IleMet: 2.568 ± 0.713
3.555IleAsn: 3.555 ± 1.43
3.753IlePro: 3.753 ± 0.476
2.37IleGln: 2.37 ± 0.964
4.345IleArg: 4.345 ± 0.929
6.123IleSer: 6.123 ± 0.8
6.32IleThr: 6.32 ± 1.083
3.555IleVal: 3.555 ± 0.979
1.383IleTrp: 1.383 ± 0.536
1.975IleTyr: 1.975 ± 0.588
0.0IleXaa: 0.0 ± 0.0
Lys
4.345LysAla: 4.345 ± 0.681
0.395LysCys: 0.395 ± 0.342
3.555LysAsp: 3.555 ± 0.736
2.173LysGlu: 2.173 ± 0.523
0.988LysPhe: 0.988 ± 0.249
2.765LysGly: 2.765 ± 0.777
0.79LysHis: 0.79 ± 0.37
4.345LysIle: 4.345 ± 0.748
2.765LysLys: 2.765 ± 0.967
3.95LysLeu: 3.95 ± 0.751
1.58LysMet: 1.58 ± 0.526
2.963LysAsn: 2.963 ± 0.827
2.173LysPro: 2.173 ± 1.005
0.395LysGln: 0.395 ± 0.249
4.543LysArg: 4.543 ± 1.155
3.16LysSer: 3.16 ± 0.921
4.148LysThr: 4.148 ± 0.984
2.963LysVal: 2.963 ± 0.833
0.395LysTrp: 0.395 ± 0.223
1.383LysTyr: 1.383 ± 0.52
0.0LysXaa: 0.0 ± 0.0
Leu
6.123LeuAla: 6.123 ± 0.89
1.383LeuCys: 1.383 ± 0.654
6.123LeuAsp: 6.123 ± 0.649
5.728LeuGlu: 5.728 ± 1.77
3.753LeuPhe: 3.753 ± 0.952
7.11LeuGly: 7.11 ± 0.922
1.975LeuHis: 1.975 ± 0.361
5.925LeuIle: 5.925 ± 0.815
5.333LeuLys: 5.333 ± 1.272
9.086LeuLeu: 9.086 ± 1.948
3.16LeuMet: 3.16 ± 0.803
3.358LeuAsn: 3.358 ± 0.699
3.358LeuPro: 3.358 ± 0.85
2.963LeuGln: 2.963 ± 1.109
5.333LeuArg: 5.333 ± 1.558
8.295LeuSer: 8.295 ± 1.299
7.703LeuThr: 7.703 ± 0.729
4.938LeuVal: 4.938 ± 1.028
0.593LeuTrp: 0.593 ± 0.512
1.383LeuTyr: 1.383 ± 0.49
0.0LeuXaa: 0.0 ± 0.0
Met
2.568MetAla: 2.568 ± 0.627
0.593MetCys: 0.593 ± 0.459
1.185MetAsp: 1.185 ± 0.428
1.185MetGlu: 1.185 ± 0.261
0.593MetPhe: 0.593 ± 0.373
2.173MetGly: 2.173 ± 0.71
0.395MetHis: 0.395 ± 0.195
2.173MetIle: 2.173 ± 0.369
1.383MetLys: 1.383 ± 0.471
2.765MetLeu: 2.765 ± 0.834
1.58MetMet: 1.58 ± 0.382
1.975MetAsn: 1.975 ± 0.763
0.593MetPro: 0.593 ± 0.452
1.383MetGln: 1.383 ± 0.54
2.173MetArg: 2.173 ± 0.449
3.95MetSer: 3.95 ± 0.833
1.778MetThr: 1.778 ± 0.292
2.173MetVal: 2.173 ± 0.731
0.198MetTrp: 0.198 ± 0.208
0.79MetTyr: 0.79 ± 0.325
0.0MetXaa: 0.0 ± 0.0
Asn
2.37AsnAla: 2.37 ± 0.447
0.198AsnCys: 0.198 ± 0.208
2.37AsnAsp: 2.37 ± 0.456
1.383AsnGlu: 1.383 ± 0.454
0.79AsnPhe: 0.79 ± 0.35
1.58AsnGly: 1.58 ± 0.532
0.988AsnHis: 0.988 ± 0.36
2.568AsnIle: 2.568 ± 0.867
1.58AsnLys: 1.58 ± 0.386
3.95AsnLeu: 3.95 ± 0.627
0.988AsnMet: 0.988 ± 0.426
1.58AsnAsn: 1.58 ± 0.594
2.568AsnPro: 2.568 ± 0.424
1.58AsnGln: 1.58 ± 0.48
1.975AsnArg: 1.975 ± 1.05
2.963AsnSer: 2.963 ± 0.537
4.74AsnThr: 4.74 ± 1.091
0.988AsnVal: 0.988 ± 0.579
0.79AsnTrp: 0.79 ± 0.37
1.58AsnTyr: 1.58 ± 0.262
0.0AsnXaa: 0.0 ± 0.0
Pro
2.37ProAla: 2.37 ± 0.537
1.185ProCys: 1.185 ± 0.413
3.358ProAsp: 3.358 ± 0.811
2.568ProGlu: 2.568 ± 0.637
1.58ProPhe: 1.58 ± 0.576
3.753ProGly: 3.753 ± 0.74
0.593ProHis: 0.593 ± 0.246
4.938ProIle: 4.938 ± 1.553
1.58ProLys: 1.58 ± 0.663
3.753ProLeu: 3.753 ± 0.756
0.593ProMet: 0.593 ± 0.221
1.383ProAsn: 1.383 ± 0.399
1.975ProPro: 1.975 ± 0.475
1.185ProGln: 1.185 ± 0.374
2.963ProArg: 2.963 ± 0.492
3.753ProSer: 3.753 ± 0.423
1.975ProThr: 1.975 ± 0.898
3.555ProVal: 3.555 ± 1.041
0.593ProTrp: 0.593 ± 0.247
1.975ProTyr: 1.975 ± 0.655
0.0ProXaa: 0.0 ± 0.0
Gln
2.37GlnAla: 2.37 ± 0.747
0.395GlnCys: 0.395 ± 0.277
2.568GlnAsp: 2.568 ± 0.926
1.58GlnGlu: 1.58 ± 0.611
0.79GlnPhe: 0.79 ± 0.206
2.963GlnGly: 2.963 ± 0.557
0.79GlnHis: 0.79 ± 0.231
2.963GlnIle: 2.963 ± 0.772
2.765GlnLys: 2.765 ± 0.489
1.58GlnLeu: 1.58 ± 0.303
1.58GlnMet: 1.58 ± 0.514
1.58GlnAsn: 1.58 ± 0.689
1.383GlnPro: 1.383 ± 0.573
1.778GlnGln: 1.778 ± 0.531
1.58GlnArg: 1.58 ± 0.554
2.173GlnSer: 2.173 ± 0.529
2.173GlnThr: 2.173 ± 0.768
2.173GlnVal: 2.173 ± 0.479
0.988GlnTrp: 0.988 ± 0.357
0.395GlnTyr: 0.395 ± 0.195
0.0GlnXaa: 0.0 ± 0.0
Arg
4.148ArgAla: 4.148 ± 0.678
0.198ArgCys: 0.198 ± 0.124
4.345ArgAsp: 4.345 ± 0.988
3.555ArgGlu: 3.555 ± 1.04
1.975ArgPhe: 1.975 ± 0.537
3.753ArgGly: 3.753 ± 1.152
0.988ArgHis: 0.988 ± 0.308
3.16ArgIle: 3.16 ± 0.705
3.16ArgLys: 3.16 ± 0.787
5.925ArgLeu: 5.925 ± 1.014
1.778ArgMet: 1.778 ± 0.382
3.358ArgAsn: 3.358 ± 0.323
2.765ArgPro: 2.765 ± 0.788
0.79ArgGln: 0.79 ± 0.25
4.345ArgArg: 4.345 ± 0.938
3.753ArgSer: 3.753 ± 0.871
3.555ArgThr: 3.555 ± 0.741
3.753ArgVal: 3.753 ± 0.588
0.198ArgTrp: 0.198 ± 0.124
2.173ArgTyr: 2.173 ± 0.761
0.0ArgXaa: 0.0 ± 0.0
Ser
6.123SerAla: 6.123 ± 1.049
0.988SerCys: 0.988 ± 0.427
4.345SerAsp: 4.345 ± 0.916
5.53SerGlu: 5.53 ± 0.838
2.963SerPhe: 2.963 ± 0.916
7.11SerGly: 7.11 ± 1.746
1.58SerHis: 1.58 ± 0.554
5.53SerIle: 5.53 ± 1.353
3.16SerLys: 3.16 ± 0.597
5.925SerLeu: 5.925 ± 0.858
3.555SerMet: 3.555 ± 0.883
2.173SerAsn: 2.173 ± 0.874
3.555SerPro: 3.555 ± 0.853
1.778SerGln: 1.778 ± 0.47
2.765SerArg: 2.765 ± 0.568
6.518SerSer: 6.518 ± 1.594
5.728SerThr: 5.728 ± 0.662
4.543SerVal: 4.543 ± 1.048
0.79SerTrp: 0.79 ± 0.496
2.568SerTyr: 2.568 ± 0.502
0.0SerXaa: 0.0 ± 0.0
Thr
5.135ThrAla: 5.135 ± 1.071
1.58ThrCys: 1.58 ± 0.608
4.148ThrAsp: 4.148 ± 0.544
4.148ThrGlu: 4.148 ± 0.968
1.778ThrPhe: 1.778 ± 0.691
5.925ThrGly: 5.925 ± 1.82
0.988ThrHis: 0.988 ± 0.333
5.925ThrIle: 5.925 ± 1.161
3.16ThrLys: 3.16 ± 0.703
5.728ThrLeu: 5.728 ± 0.872
2.765ThrMet: 2.765 ± 0.6
3.16ThrAsn: 3.16 ± 0.555
2.173ThrPro: 2.173 ± 0.612
2.963ThrGln: 2.963 ± 0.739
2.765ThrArg: 2.765 ± 0.697
4.543ThrSer: 4.543 ± 0.826
4.148ThrThr: 4.148 ± 0.803
5.333ThrVal: 5.333 ± 0.933
0.988ThrTrp: 0.988 ± 0.434
2.568ThrTyr: 2.568 ± 0.764
0.0ThrXaa: 0.0 ± 0.0
Val
6.32ValAla: 6.32 ± 1.178
0.395ValCys: 0.395 ± 0.415
4.74ValAsp: 4.74 ± 0.726
2.963ValGlu: 2.963 ± 0.875
1.383ValPhe: 1.383 ± 0.329
4.543ValGly: 4.543 ± 0.529
1.185ValHis: 1.185 ± 0.469
4.148ValIle: 4.148 ± 1.284
1.58ValLys: 1.58 ± 0.414
8.098ValLeu: 8.098 ± 1.193
1.778ValMet: 1.778 ± 0.254
1.778ValAsn: 1.778 ± 0.45
1.778ValPro: 1.778 ± 0.891
1.778ValGln: 1.778 ± 0.661
3.358ValArg: 3.358 ± 0.422
5.135ValSer: 5.135 ± 1.236
3.753ValThr: 3.753 ± 1.006
3.358ValVal: 3.358 ± 0.561
0.395ValTrp: 0.395 ± 0.183
2.173ValTyr: 2.173 ± 0.524
0.0ValXaa: 0.0 ± 0.0
Trp
1.185TrpAla: 1.185 ± 0.387
0.395TrpCys: 0.395 ± 0.183
0.79TrpAsp: 0.79 ± 0.314
0.198TrpGlu: 0.198 ± 0.199
0.593TrpPhe: 0.593 ± 0.373
0.593TrpGly: 0.593 ± 0.247
0.198TrpHis: 0.198 ± 0.124
0.593TrpIle: 0.593 ± 0.247
0.395TrpLys: 0.395 ± 0.311
0.988TrpLeu: 0.988 ± 0.276
0.198TrpMet: 0.198 ± 0.199
0.395TrpAsn: 0.395 ± 0.195
0.79TrpPro: 0.79 ± 0.424
0.395TrpGln: 0.395 ± 0.249
0.79TrpArg: 0.79 ± 0.338
0.988TrpSer: 0.988 ± 0.5
0.395TrpThr: 0.395 ± 0.249
0.79TrpVal: 0.79 ± 0.325
0.198TrpTrp: 0.198 ± 0.124
0.198TrpTyr: 0.198 ± 0.209
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.568TyrAla: 2.568 ± 0.904
0.988TyrCys: 0.988 ± 0.446
1.185TyrAsp: 1.185 ± 0.746
1.58TyrGlu: 1.58 ± 0.382
0.593TyrPhe: 0.593 ± 0.373
1.185TyrGly: 1.185 ± 0.411
0.988TyrHis: 0.988 ± 0.4
2.173TyrIle: 2.173 ± 0.455
2.765TyrLys: 2.765 ± 0.67
2.963TyrLeu: 2.963 ± 0.866
0.988TyrMet: 0.988 ± 0.412
0.593TyrAsn: 0.593 ± 0.233
1.58TyrPro: 1.58 ± 0.435
1.58TyrGln: 1.58 ± 0.248
0.988TyrArg: 0.988 ± 0.446
1.975TyrSer: 1.975 ± 0.553
1.58TyrThr: 1.58 ± 0.945
2.173TyrVal: 2.173 ± 0.358
0.0TyrTrp: 0.0 ± 0.0
0.395TyrTyr: 0.395 ± 0.249
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (5064 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski