Achromobacter sp. AONIH1

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter; unclassified Achromobacter

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5889 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2I8DF85|A0A2I8DF85_9BURK IclR family transcriptional regulator OS=Achromobacter sp. AONIH1 OX=1758194 GN=C2U31_05015 PE=4 SV=1
MM1 pKa = 7.12RR2 pKa = 11.84TWMCLICGWVYY13 pKa = 11.09DD14 pKa = 4.61EE15 pKa = 4.94EE16 pKa = 6.63AGLPDD21 pKa = 3.89EE22 pKa = 5.81GIAPGTRR29 pKa = 11.84WEE31 pKa = 4.42DD32 pKa = 3.53VPPNWVCPEE41 pKa = 3.8CGARR45 pKa = 11.84KK46 pKa = 9.54EE47 pKa = 4.36DD48 pKa = 3.84FEE50 pKa = 5.52LMEE53 pKa = 4.22II54 pKa = 4.3

Molecular weight: 6.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2I8DDR5|A0A2I8DDR5_9BURK ABC transporter ATP-binding protein OS=Achromobacter sp. AONIH1 OX=1758194 GN=C2U31_03740 PE=4 SV=1
MM1 pKa = 7.07QGVHH5 pKa = 6.72IGPARR10 pKa = 11.84IARR13 pKa = 11.84PAGLVRR19 pKa = 11.84VVRR22 pKa = 11.84LPGISRR28 pKa = 11.84LPRR31 pKa = 11.84LARR34 pKa = 11.84LAGLPRR40 pKa = 11.84LVRR43 pKa = 11.84LAGHH47 pKa = 6.4FRR49 pKa = 11.84RR50 pKa = 11.84HH51 pKa = 4.94AARR54 pKa = 11.84LIVVLPGFAWLLLLTGGLLGRR75 pKa = 11.84RR76 pKa = 11.84VAGRR80 pKa = 11.84MSRR83 pKa = 11.84VHH85 pKa = 6.7GGLLKK90 pKa = 10.24IRR92 pKa = 11.84ARR94 pKa = 11.84RR95 pKa = 11.84YY96 pKa = 8.89RR97 pKa = 3.43

Molecular weight: 10.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5889

0

5889

1952274

29

10627

331.5

35.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.491 ± 0.046

0.889 ± 0.012

5.411 ± 0.027

4.95 ± 0.037

3.281 ± 0.023

8.72 ± 0.06

2.064 ± 0.021

4.307 ± 0.021

2.775 ± 0.028

11.0 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.403 ± 0.017

2.549 ± 0.028

5.368 ± 0.029

3.892 ± 0.021

7.384 ± 0.041

5.383 ± 0.03

4.857 ± 0.036

7.365 ± 0.03

1.459 ± 0.014

2.454 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski