Sulfolobales Virus YNP2

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified archaeal dsDNA viruses

Average proteome isoelectric point is 7.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 60 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0N7FZ19|A0A0N7FZ19_9VIRU Uncharacterized protein OS=Sulfolobales Virus YNP2 OX=1732180 PE=4 SV=1
MM1 pKa = 7.51KK2 pKa = 10.42RR3 pKa = 11.84LLVLLLVPLMVSLLVVGDD21 pKa = 4.39AGAILDD27 pKa = 4.07WSDD30 pKa = 2.99GSAVVTIQPLTEE42 pKa = 4.08TVIDD46 pKa = 4.61GYY48 pKa = 10.59IVNAFYY54 pKa = 10.88NGSNQVVLLAEE65 pKa = 5.17PYY67 pKa = 10.07YY68 pKa = 10.45QGQNLQQVTFSLYY81 pKa = 10.5DD82 pKa = 3.41YY83 pKa = 7.77YY84 pKa = 11.03THH86 pKa = 6.7QFIGNYY92 pKa = 8.62TIEE95 pKa = 4.41DD96 pKa = 4.18NYY98 pKa = 11.11TVVTVPSNITVIYY111 pKa = 10.0IYY113 pKa = 10.23MEE115 pKa = 4.25GQQFGPFYY123 pKa = 10.16ITVNGGNFAPPLLDD137 pKa = 3.23QMLMYY142 pKa = 10.29IIPLSVVALFGLRR155 pKa = 11.84AGLRR159 pKa = 11.84NVGLGLLVASIFTSAEE175 pKa = 3.8MVALGVSNPWLYY187 pKa = 10.85AIPTLEE193 pKa = 3.83IMFGIILLWHH203 pKa = 6.34SVQTSGG209 pKa = 5.15

Molecular weight: 23.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0N9NYU7|A0A0N9NYU7_9VIRU Uncharacterized protein OS=Sulfolobales Virus YNP2 OX=1732180 PE=4 SV=1
MM1 pKa = 6.73AHH3 pKa = 7.51KK4 pKa = 10.45YY5 pKa = 7.27HH6 pKa = 5.76THH8 pKa = 6.01SGRR11 pKa = 11.84LVEE14 pKa = 4.04WRR16 pKa = 11.84RR17 pKa = 11.84TFAEE21 pKa = 4.05AAKK24 pKa = 9.31MCSEE28 pKa = 4.2KK29 pKa = 11.1VKK31 pKa = 10.64GLPKK35 pKa = 10.12GQKK38 pKa = 7.92LQAYY42 pKa = 7.47RR43 pKa = 11.84MCMRR47 pKa = 11.84EE48 pKa = 4.01TLRR51 pKa = 11.84KK52 pKa = 9.35KK53 pKa = 10.53

Molecular weight: 6.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

60

0

60

10418

45

1282

173.6

19.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.846 ± 0.362

0.49 ± 0.094

3.974 ± 0.386

6.431 ± 0.537

4.55 ± 0.377

5.51 ± 0.495

1.056 ± 0.115

8.409 ± 0.371

6.575 ± 0.749

10.299 ± 0.502

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.352 ± 0.287

5.356 ± 0.442

5.212 ± 0.581

3.686 ± 0.73

4.703 ± 0.385

6.038 ± 0.346

5.414 ± 0.356

7.717 ± 0.45

1.209 ± 0.124

5.155 ± 0.359
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski