Podoviridae sp. ctka020

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 44 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5Q2W699|A0A5Q2W699_9CAUD Uncharacterized protein OS=Podoviridae sp. ctka020 OX=2656713 PE=4 SV=1
MM1 pKa = 6.92GAEE4 pKa = 4.1RR5 pKa = 11.84EE6 pKa = 4.18RR7 pKa = 11.84PEE9 pKa = 4.56IMTTEE14 pKa = 4.16DD15 pKa = 4.3FINDD19 pKa = 3.23VDD21 pKa = 4.04PATEE25 pKa = 4.0AKK27 pKa = 10.06QDD29 pKa = 3.66VGNTTLSTISAKK41 pKa = 10.58LITGIPLVPTTSGGLTIYY59 pKa = 10.77RR60 pKa = 11.84NIDD63 pKa = 3.41LDD65 pKa = 3.8EE66 pKa = 4.46TGQNIKK72 pKa = 10.79GSTGQLYY79 pKa = 10.54GYY81 pKa = 9.97YY82 pKa = 9.72FYY84 pKa = 11.34NAAATVRR91 pKa = 11.84YY92 pKa = 9.86LKK94 pKa = 10.44FYY96 pKa = 11.18NKK98 pKa = 8.59ATAPTVGSDD107 pKa = 3.72TPVLTLPLPPGAAGHH122 pKa = 6.09VEE124 pKa = 4.31FTDD127 pKa = 4.47GVAFSTGIGAGATTGVADD145 pKa = 4.67NDD147 pKa = 3.96TGAPSANDD155 pKa = 3.09VVVNILYY162 pKa = 10.23KK163 pKa = 10.77

Molecular weight: 17.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5Q2W6B3|A0A5Q2W6B3_9CAUD Uncharacterized protein OS=Podoviridae sp. ctka020 OX=2656713 PE=4 SV=1
MM1 pKa = 6.88QRR3 pKa = 11.84RR4 pKa = 11.84EE5 pKa = 3.89RR6 pKa = 11.84THH8 pKa = 7.46RR9 pKa = 11.84LILLPYY15 pKa = 9.56RR16 pKa = 11.84GFKK19 pKa = 9.83EE20 pKa = 4.17FCEE23 pKa = 4.78FPFVSCVRR31 pKa = 11.84LFPLRR36 pKa = 11.84EE37 pKa = 3.75PVLNGIAA44 pKa = 3.59

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

44

0

44

10245

30

920

232.8

25.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.15 ± 0.569

0.996 ± 0.19

5.359 ± 0.237

6.257 ± 0.566

3.885 ± 0.276

7.301 ± 0.537

1.571 ± 0.189

6.218 ± 0.22

7.477 ± 0.722

8.023 ± 0.332

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.304 ± 0.175

4.998 ± 0.265

4.158 ± 0.328

4.08 ± 0.317

4.461 ± 0.34

6.657 ± 0.517

7.418 ± 0.589

5.993 ± 0.291

1.24 ± 0.187

3.455 ± 0.225
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski