Amino acid dipepetide frequency for Macrophomina phaseolina chrysovirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.184AlaAla: 4.184 ± 1.158
0.523AlaCys: 0.523 ± 0.238
3.138AlaAsp: 3.138 ± 0.35
6.276AlaGlu: 6.276 ± 1.268
1.308AlaPhe: 1.308 ± 0.225
4.446AlaGly: 4.446 ± 0.649
1.569AlaHis: 1.569 ± 0.232
2.354AlaIle: 2.354 ± 0.625
3.923AlaLys: 3.923 ± 0.601
6.799AlaLeu: 6.799 ± 1.372
3.4AlaMet: 3.4 ± 0.788
2.615AlaAsn: 2.615 ± 1.01
2.092AlaPro: 2.092 ± 0.63
1.569AlaGln: 1.569 ± 0.574
6.538AlaArg: 6.538 ± 1.426
6.276AlaSer: 6.276 ± 0.667
4.969AlaThr: 4.969 ± 1.355
6.015AlaVal: 6.015 ± 1.056
1.308AlaTrp: 1.308 ± 0.368
1.046AlaTyr: 1.046 ± 0.476
0.0AlaXaa: 0.0 ± 0.0
Cys
0.262CysAla: 0.262 ± 0.234
0.0CysCys: 0.0 ± 0.0
1.308CysAsp: 1.308 ± 0.626
0.785CysGlu: 0.785 ± 0.422
0.0CysPhe: 0.0 ± 0.0
1.046CysGly: 1.046 ± 0.359
0.785CysHis: 0.785 ± 0.242
0.0CysIle: 0.0 ± 0.0
0.262CysLys: 0.262 ± 0.219
1.046CysLeu: 1.046 ± 0.406
0.523CysMet: 0.523 ± 0.467
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.262CysGln: 0.262 ± 0.272
0.785CysArg: 0.785 ± 0.404
2.354CysSer: 2.354 ± 0.36
0.523CysThr: 0.523 ± 0.304
0.523CysVal: 0.523 ± 0.544
0.262CysTrp: 0.262 ± 0.234
0.785CysTyr: 0.785 ± 0.404
0.0CysXaa: 0.0 ± 0.0
Asp
3.4AspAla: 3.4 ± 0.567
0.785AspCys: 0.785 ± 0.451
4.184AspAsp: 4.184 ± 0.623
5.23AspGlu: 5.23 ± 1.081
2.354AspPhe: 2.354 ± 0.91
5.753AspGly: 5.753 ± 1.921
1.046AspHis: 1.046 ± 0.476
4.707AspIle: 4.707 ± 0.59
2.354AspLys: 2.354 ± 0.532
6.015AspLeu: 6.015 ± 0.929
1.831AspMet: 1.831 ± 0.856
0.523AspAsn: 0.523 ± 0.304
1.569AspPro: 1.569 ± 0.439
1.046AspGln: 1.046 ± 0.359
4.446AspArg: 4.446 ± 0.485
1.569AspSer: 1.569 ± 0.507
3.138AspThr: 3.138 ± 0.554
6.015AspVal: 6.015 ± 1.505
1.569AspTrp: 1.569 ± 0.723
2.877AspTyr: 2.877 ± 1.368
0.0AspXaa: 0.0 ± 0.0
Glu
6.799GluAla: 6.799 ± 1.124
0.785GluCys: 0.785 ± 0.237
4.969GluAsp: 4.969 ± 0.691
4.969GluGlu: 4.969 ± 0.482
3.138GluPhe: 3.138 ± 1.207
3.4GluGly: 3.4 ± 0.567
2.615GluHis: 2.615 ± 0.707
3.661GluIle: 3.661 ± 1.45
6.799GluLys: 6.799 ± 0.552
7.845GluLeu: 7.845 ± 0.611
3.923GluMet: 3.923 ± 0.906
2.615GluAsn: 2.615 ± 0.921
1.308GluPro: 1.308 ± 0.225
4.184GluGln: 4.184 ± 0.476
4.446GluArg: 4.446 ± 0.847
2.877GluSer: 2.877 ± 0.581
2.615GluThr: 2.615 ± 0.446
3.661GluVal: 3.661 ± 0.423
2.092GluTrp: 2.092 ± 0.404
2.092GluTyr: 2.092 ± 1.198
0.0GluXaa: 0.0 ± 0.0
Phe
1.831PheAla: 1.831 ± 0.714
0.523PheCys: 0.523 ± 0.238
1.569PheAsp: 1.569 ± 1.017
2.354PheGlu: 2.354 ± 0.674
1.046PhePhe: 1.046 ± 0.595
2.615PheGly: 2.615 ± 1.352
0.523PheHis: 0.523 ± 0.273
1.569PheIle: 1.569 ± 0.189
1.569PheLys: 1.569 ± 1.017
1.046PheLeu: 1.046 ± 0.342
1.569PheMet: 1.569 ± 0.393
2.092PheAsn: 2.092 ± 0.61
0.523PhePro: 0.523 ± 0.247
1.308PheGln: 1.308 ± 0.176
4.184PheArg: 4.184 ± 0.561
3.4PheSer: 3.4 ± 0.715
2.354PheThr: 2.354 ± 0.896
1.308PheVal: 1.308 ± 0.843
0.0PheTrp: 0.0 ± 0.0
0.523PheTyr: 0.523 ± 0.3
0.0PheXaa: 0.0 ± 0.0
Gly
4.969GlyAla: 4.969 ± 1.374
0.785GlyCys: 0.785 ± 0.242
4.184GlyAsp: 4.184 ± 0.565
4.184GlyGlu: 4.184 ± 0.341
2.092GlyPhe: 2.092 ± 0.814
4.707GlyGly: 4.707 ± 0.877
1.308GlyHis: 1.308 ± 0.659
4.446GlyIle: 4.446 ± 0.485
4.969GlyLys: 4.969 ± 0.647
7.061GlyLeu: 7.061 ± 1.774
3.138GlyMet: 3.138 ± 0.739
1.569GlyAsn: 1.569 ± 0.491
1.046GlyPro: 1.046 ± 0.342
2.092GlyGln: 2.092 ± 0.785
5.23GlyArg: 5.23 ± 1.668
3.923GlySer: 3.923 ± 1.164
3.138GlyThr: 3.138 ± 0.328
3.661GlyVal: 3.661 ± 1.65
1.569GlyTrp: 1.569 ± 0.698
1.831GlyTyr: 1.831 ± 0.796
0.0GlyXaa: 0.0 ± 0.0
His
1.046HisAla: 1.046 ± 0.057
0.0HisCys: 0.0 ± 0.0
1.046HisAsp: 1.046 ± 0.786
2.354HisGlu: 2.354 ± 0.468
1.046HisPhe: 1.046 ± 0.452
1.046HisGly: 1.046 ± 0.595
0.262HisHis: 0.262 ± 0.219
1.046HisIle: 1.046 ± 0.433
1.046HisLys: 1.046 ± 0.359
2.092HisLeu: 2.092 ± 0.114
1.046HisMet: 1.046 ± 0.433
0.523HisAsn: 0.523 ± 0.437
0.262HisPro: 0.262 ± 0.234
0.785HisGln: 0.785 ± 0.482
0.262HisArg: 0.262 ± 0.234
2.877HisSer: 2.877 ± 0.419
0.523HisThr: 0.523 ± 0.29
3.138HisVal: 3.138 ± 1.346
0.785HisTrp: 0.785 ± 0.404
0.262HisTyr: 0.262 ± 0.219
0.0HisXaa: 0.0 ± 0.0
Ile
4.184IleAla: 4.184 ± 0.551
0.262IleCys: 0.262 ± 0.234
2.615IleAsp: 2.615 ± 0.435
2.615IleGlu: 2.615 ± 0.399
1.308IlePhe: 1.308 ± 0.543
3.138IleGly: 3.138 ± 0.961
1.569IleHis: 1.569 ± 0.308
2.092IleIle: 2.092 ± 0.465
1.569IleLys: 1.569 ± 0.82
3.923IleLeu: 3.923 ± 0.527
1.308IleMet: 1.308 ± 0.626
1.831IleAsn: 1.831 ± 0.611
2.877IlePro: 2.877 ± 0.737
1.831IleGln: 1.831 ± 0.441
4.446IleArg: 4.446 ± 0.554
3.661IleSer: 3.661 ± 1.022
2.877IleThr: 2.877 ± 0.995
4.707IleVal: 4.707 ± 0.437
0.523IleTrp: 0.523 ± 0.273
2.354IleTyr: 2.354 ± 0.475
0.0IleXaa: 0.0 ± 0.0
Lys
2.615LysAla: 2.615 ± 1.266
1.046LysCys: 1.046 ± 0.42
3.661LysAsp: 3.661 ± 0.513
5.492LysGlu: 5.492 ± 0.537
2.877LysPhe: 2.877 ± 0.92
2.877LysGly: 2.877 ± 0.671
1.046LysHis: 1.046 ± 0.494
2.354LysIle: 2.354 ± 0.896
3.138LysLys: 3.138 ± 0.488
3.4LysLeu: 3.4 ± 0.892
3.661LysMet: 3.661 ± 0.791
1.569LysAsn: 1.569 ± 0.308
1.831LysPro: 1.831 ± 0.643
2.877LysGln: 2.877 ± 1.056
6.015LysArg: 6.015 ± 1.666
4.446LysSer: 4.446 ± 0.138
3.138LysThr: 3.138 ± 1.117
3.4LysVal: 3.4 ± 1.092
0.523LysTrp: 0.523 ± 0.29
3.661LysTyr: 3.661 ± 1.667
0.0LysXaa: 0.0 ± 0.0
Leu
9.153LeuAla: 9.153 ± 1.538
0.785LeuCys: 0.785 ± 0.397
6.015LeuAsp: 6.015 ± 0.855
7.322LeuGlu: 7.322 ± 1.146
1.308LeuPhe: 1.308 ± 0.521
5.23LeuGly: 5.23 ± 1.462
1.046LeuHis: 1.046 ± 0.601
4.707LeuIle: 4.707 ± 0.608
7.061LeuLys: 7.061 ± 0.671
7.322LeuLeu: 7.322 ± 1.294
3.138LeuMet: 3.138 ± 1.244
3.138LeuAsn: 3.138 ± 0.877
3.4LeuPro: 3.4 ± 0.456
2.877LeuGln: 2.877 ± 1.847
2.877LeuArg: 2.877 ± 0.75
8.107LeuSer: 8.107 ± 2.509
3.661LeuThr: 3.661 ± 0.686
6.276LeuVal: 6.276 ± 1.313
2.092LeuTrp: 2.092 ± 0.114
3.138LeuTyr: 3.138 ± 0.635
0.0LeuXaa: 0.0 ± 0.0
Met
2.877MetAla: 2.877 ± 0.371
0.523MetCys: 0.523 ± 0.238
3.138MetAsp: 3.138 ± 1.233
2.354MetGlu: 2.354 ± 0.602
1.831MetPhe: 1.831 ± 0.956
3.661MetGly: 3.661 ± 1.04
1.569MetHis: 1.569 ± 0.613
1.569MetIle: 1.569 ± 0.911
2.092MetLys: 2.092 ± 0.29
4.446MetLeu: 4.446 ± 1.203
2.354MetMet: 2.354 ± 0.334
1.831MetAsn: 1.831 ± 0.714
2.354MetPro: 2.354 ± 0.237
1.308MetGln: 1.308 ± 0.26
2.354MetArg: 2.354 ± 0.818
3.4MetSer: 3.4 ± 0.853
2.092MetThr: 2.092 ± 0.114
2.615MetVal: 2.615 ± 0.66
0.262MetTrp: 0.262 ± 0.219
1.308MetTyr: 1.308 ± 0.493
0.0MetXaa: 0.0 ± 0.0
Asn
2.354AsnAla: 2.354 ± 0.805
0.523AsnCys: 0.523 ± 0.544
0.523AsnAsp: 0.523 ± 0.3
3.138AsnGlu: 3.138 ± 1.131
1.308AsnPhe: 1.308 ± 0.407
3.138AsnGly: 3.138 ± 0.328
0.262AsnHis: 0.262 ± 0.272
1.831AsnIle: 1.831 ± 0.693
2.615AsnLys: 2.615 ± 0.435
4.707AsnLeu: 4.707 ± 1.022
0.523AsnMet: 0.523 ± 0.374
1.831AsnAsn: 1.831 ± 1.0
0.785AsnPro: 0.785 ± 0.41
0.785AsnGln: 0.785 ± 0.656
2.615AsnArg: 2.615 ± 0.787
1.569AsnSer: 1.569 ± 0.308
1.831AsnThr: 1.831 ± 0.762
3.923AsnVal: 3.923 ± 1.326
0.785AsnTrp: 0.785 ± 0.492
0.785AsnTyr: 0.785 ± 0.237
0.0AsnXaa: 0.0 ± 0.0
Pro
2.615ProAla: 2.615 ± 0.65
0.0ProCys: 0.0 ± 0.0
2.877ProAsp: 2.877 ± 0.609
2.354ProGlu: 2.354 ± 0.143
0.785ProPhe: 0.785 ± 0.512
2.615ProGly: 2.615 ± 0.853
0.785ProHis: 0.785 ± 0.237
0.523ProIle: 0.523 ± 0.273
2.877ProLys: 2.877 ± 0.857
1.831ProLeu: 1.831 ± 1.071
1.308ProMet: 1.308 ± 0.445
1.569ProAsn: 1.569 ± 0.82
2.354ProPro: 2.354 ± 0.579
1.569ProGln: 1.569 ± 0.616
2.092ProArg: 2.092 ± 0.63
1.831ProSer: 1.831 ± 1.245
1.831ProThr: 1.831 ± 0.27
2.877ProVal: 2.877 ± 0.739
0.523ProTrp: 0.523 ± 0.247
0.785ProTyr: 0.785 ± 0.219
0.0ProXaa: 0.0 ± 0.0
Gln
2.092GlnAla: 2.092 ± 0.697
0.785GlnCys: 0.785 ± 0.492
1.308GlnAsp: 1.308 ± 0.522
2.092GlnGlu: 2.092 ± 0.432
0.785GlnPhe: 0.785 ± 0.397
2.354GlnGly: 2.354 ± 0.334
0.785GlnHis: 0.785 ± 0.397
1.831GlnIle: 1.831 ± 0.941
2.092GlnLys: 2.092 ± 1.038
2.354GlnLeu: 2.354 ± 0.739
2.354GlnMet: 2.354 ± 0.983
1.569GlnAsn: 1.569 ± 0.734
1.308GlnPro: 1.308 ± 0.594
1.308GlnGln: 1.308 ± 0.595
1.046GlnArg: 1.046 ± 0.406
3.138GlnSer: 3.138 ± 1.354
1.046GlnThr: 1.046 ± 0.599
1.308GlnVal: 1.308 ± 0.414
0.785GlnTrp: 0.785 ± 0.529
1.308GlnTyr: 1.308 ± 0.531
0.0GlnXaa: 0.0 ± 0.0
Arg
4.184ArgAla: 4.184 ± 1.277
1.046ArgCys: 1.046 ± 0.657
5.23ArgAsp: 5.23 ± 1.634
5.753ArgGlu: 5.753 ± 0.3
1.308ArgPhe: 1.308 ± 0.617
4.446ArgGly: 4.446 ± 1.326
2.092ArgHis: 2.092 ± 1.492
3.138ArgIle: 3.138 ± 0.74
4.446ArgLys: 4.446 ± 0.501
6.538ArgLeu: 6.538 ± 1.488
3.661ArgMet: 3.661 ± 0.99
3.4ArgAsn: 3.4 ± 0.835
1.569ArgPro: 1.569 ± 0.659
1.308ArgGln: 1.308 ± 0.414
7.584ArgArg: 7.584 ± 1.377
3.923ArgSer: 3.923 ± 1.159
3.661ArgThr: 3.661 ± 0.587
5.492ArgVal: 5.492 ± 0.658
1.569ArgTrp: 1.569 ± 0.842
2.354ArgTyr: 2.354 ± 0.602
0.0ArgXaa: 0.0 ± 0.0
Ser
3.923SerAla: 3.923 ± 0.65
0.523SerCys: 0.523 ± 0.3
4.969SerAsp: 4.969 ± 0.296
5.492SerGlu: 5.492 ± 0.944
2.877SerPhe: 2.877 ± 1.126
4.707SerGly: 4.707 ± 0.509
1.831SerHis: 1.831 ± 0.212
4.707SerIle: 4.707 ± 1.343
2.877SerLys: 2.877 ± 0.419
6.276SerLeu: 6.276 ± 1.505
3.661SerMet: 3.661 ± 0.729
2.615SerAsn: 2.615 ± 0.627
3.138SerPro: 3.138 ± 0.832
2.092SerGln: 2.092 ± 0.63
6.015SerArg: 6.015 ± 1.342
5.23SerSer: 5.23 ± 1.263
2.354SerThr: 2.354 ± 1.426
4.969SerVal: 4.969 ± 1.1
1.308SerTrp: 1.308 ± 0.631
3.138SerTyr: 3.138 ± 1.058
0.0SerXaa: 0.0 ± 0.0
Thr
3.4ThrAla: 3.4 ± 1.559
0.523ThrCys: 0.523 ± 0.467
3.4ThrAsp: 3.4 ± 0.705
3.4ThrGlu: 3.4 ± 0.483
1.308ThrPhe: 1.308 ± 0.474
2.092ThrGly: 2.092 ± 0.372
0.262ThrHis: 0.262 ± 0.227
3.138ThrIle: 3.138 ± 0.532
3.4ThrLys: 3.4 ± 0.326
4.969ThrLeu: 4.969 ± 1.311
1.308ThrMet: 1.308 ± 0.407
2.615ThrAsn: 2.615 ± 0.581
1.569ThrPro: 1.569 ± 1.298
0.785ThrGln: 0.785 ± 0.482
3.661ThrArg: 3.661 ± 1.075
4.969ThrSer: 4.969 ± 1.582
2.092ThrThr: 2.092 ± 0.619
3.923ThrVal: 3.923 ± 0.496
1.046ThrTrp: 1.046 ± 0.595
1.569ThrTyr: 1.569 ± 0.723
0.0ThrXaa: 0.0 ± 0.0
Val
6.538ValAla: 6.538 ± 1.429
0.523ValCys: 0.523 ± 0.29
4.446ValAsp: 4.446 ± 0.368
4.184ValGlu: 4.184 ± 0.861
2.877ValPhe: 2.877 ± 0.466
4.969ValGly: 4.969 ± 0.894
1.308ValHis: 1.308 ± 0.428
4.184ValIle: 4.184 ± 1.258
3.661ValLys: 3.661 ± 0.831
5.23ValLeu: 5.23 ± 0.744
2.877ValMet: 2.877 ± 0.286
2.615ValAsn: 2.615 ± 0.714
4.446ValPro: 4.446 ± 1.288
2.877ValGln: 2.877 ± 0.671
6.276ValArg: 6.276 ± 1.041
4.707ValSer: 4.707 ± 0.408
3.661ValThr: 3.661 ± 0.458
5.492ValVal: 5.492 ± 0.635
0.523ValTrp: 0.523 ± 0.3
2.092ValTyr: 2.092 ± 0.476
0.0ValXaa: 0.0 ± 0.0
Trp
1.569TrpAla: 1.569 ± 0.6
0.262TrpCys: 0.262 ± 0.219
0.523TrpAsp: 0.523 ± 0.467
1.831TrpGlu: 1.831 ± 0.544
1.046TrpPhe: 1.046 ± 0.639
1.046TrpGly: 1.046 ± 1.088
0.0TrpHis: 0.0 ± 0.0
0.523TrpIle: 0.523 ± 0.247
0.785TrpLys: 0.785 ± 0.404
2.615TrpLeu: 2.615 ± 0.446
0.262TrpMet: 0.262 ± 0.234
0.523TrpAsn: 0.523 ± 0.273
0.262TrpPro: 0.262 ± 0.227
0.262TrpGln: 0.262 ± 0.272
0.785TrpArg: 0.785 ± 0.397
2.092TrpSer: 2.092 ± 0.404
1.569TrpThr: 1.569 ± 0.393
1.046TrpVal: 1.046 ± 0.433
0.262TrpTrp: 0.262 ± 0.234
0.523TrpTyr: 0.523 ± 0.304
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.354TyrAla: 2.354 ± 0.518
1.308TyrCys: 1.308 ± 0.493
1.308TyrAsp: 1.308 ± 0.407
2.615TyrGlu: 2.615 ± 0.738
1.308TyrPhe: 1.308 ± 0.631
2.615TyrGly: 2.615 ± 0.349
0.785TyrHis: 0.785 ± 0.397
1.308TyrIle: 1.308 ± 0.595
2.092TyrLys: 2.092 ± 0.965
3.138TyrLeu: 3.138 ± 0.657
1.831TyrMet: 1.831 ± 0.803
1.046TyrAsn: 1.046 ± 0.599
1.308TyrPro: 1.308 ± 0.487
0.523TyrGln: 0.523 ± 0.3
1.046TyrArg: 1.046 ± 0.057
2.354TyrSer: 2.354 ± 0.334
2.354TyrThr: 2.354 ± 0.625
3.138TyrVal: 3.138 ± 0.785
0.0TyrTrp: 0.0 ± 0.0
1.831TyrTyr: 1.831 ± 0.702
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (3825 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski