Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_468

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.019AlaAla: 4.019 ± 1.117
0.67AlaCys: 0.67 ± 0.547
4.019AlaAsp: 4.019 ± 0.968
1.34AlaGlu: 1.34 ± 0.905
1.34AlaPhe: 1.34 ± 0.66
2.009AlaGly: 2.009 ± 1.388
1.34AlaHis: 1.34 ± 0.662
1.34AlaIle: 1.34 ± 0.743
3.349AlaLys: 3.349 ± 1.964
10.717AlaLeu: 10.717 ± 2.561
1.34AlaMet: 1.34 ± 0.991
4.689AlaAsn: 4.689 ± 0.853
3.349AlaPro: 3.349 ± 1.649
4.689AlaGln: 4.689 ± 1.319
2.679AlaArg: 2.679 ± 1.011
4.019AlaSer: 4.019 ± 1.894
2.679AlaThr: 2.679 ± 1.263
2.679AlaVal: 2.679 ± 0.846
0.67AlaTrp: 0.67 ± 0.463
2.009AlaTyr: 2.009 ± 0.808
0.0AlaXaa: 0.0 ± 0.0
Cys
1.34CysAla: 1.34 ± 0.877
0.0CysCys: 0.0 ± 0.0
0.67CysAsp: 0.67 ± 0.463
0.0CysGlu: 0.0 ± 0.0
2.009CysPhe: 2.009 ± 1.591
2.009CysGly: 2.009 ± 1.641
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
2.009CysLys: 2.009 ± 1.252
1.34CysLeu: 1.34 ± 0.877
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.67CysPro: 0.67 ± 0.547
0.67CysGln: 0.67 ± 0.743
0.0CysArg: 0.0 ± 0.0
1.34CysSer: 1.34 ± 0.923
0.0CysThr: 0.0 ± 0.0
0.67CysVal: 0.67 ± 0.547
0.0CysTrp: 0.0 ± 0.0
0.67CysTyr: 0.67 ± 0.547
0.0CysXaa: 0.0 ± 0.0
Asp
4.019AspAla: 4.019 ± 1.249
0.67AspCys: 0.67 ± 0.547
5.358AspAsp: 5.358 ± 0.935
5.358AspGlu: 5.358 ± 1.271
6.028AspPhe: 6.028 ± 1.551
0.67AspGly: 0.67 ± 0.463
2.009AspHis: 2.009 ± 0.908
2.679AspIle: 2.679 ± 0.832
4.019AspLys: 4.019 ± 1.717
7.368AspLeu: 7.368 ± 2.391
0.67AspMet: 0.67 ± 0.463
2.679AspAsn: 2.679 ± 0.766
2.679AspPro: 2.679 ± 0.928
2.009AspGln: 2.009 ± 1.288
2.009AspArg: 2.009 ± 0.953
3.349AspSer: 3.349 ± 1.01
1.34AspThr: 1.34 ± 0.743
4.689AspVal: 4.689 ± 3.005
1.34AspTrp: 1.34 ± 1.41
5.358AspTyr: 5.358 ± 1.27
0.0AspXaa: 0.0 ± 0.0
Glu
2.679GluAla: 2.679 ± 0.769
0.0GluCys: 0.0 ± 0.0
2.679GluAsp: 2.679 ± 1.292
3.349GluGlu: 3.349 ± 1.819
2.679GluPhe: 2.679 ± 1.023
0.67GluGly: 0.67 ± 0.674
0.67GluHis: 0.67 ± 0.463
6.028GluIle: 6.028 ± 1.853
2.679GluLys: 2.679 ± 1.19
2.009GluLeu: 2.009 ± 0.953
0.0GluMet: 0.0 ± 0.0
5.358GluAsn: 5.358 ± 1.812
1.34GluPro: 1.34 ± 0.953
3.349GluGln: 3.349 ± 1.646
0.67GluArg: 0.67 ± 0.705
3.349GluSer: 3.349 ± 1.964
2.679GluThr: 2.679 ± 0.832
4.019GluVal: 4.019 ± 1.249
0.0GluTrp: 0.0 ± 0.0
4.019GluTyr: 4.019 ± 1.798
0.0GluXaa: 0.0 ± 0.0
Phe
3.349PheAla: 3.349 ± 1.06
1.34PheCys: 1.34 ± 0.877
4.689PheAsp: 4.689 ± 0.988
1.34PheGlu: 1.34 ± 0.905
3.349PhePhe: 3.349 ± 1.649
4.019PheGly: 4.019 ± 1.457
0.0PheHis: 0.0 ± 0.0
4.689PheIle: 4.689 ± 1.407
3.349PheLys: 3.349 ± 0.924
1.34PheLeu: 1.34 ± 0.512
0.67PheMet: 0.67 ± 0.674
3.349PheAsn: 3.349 ± 1.905
2.679PhePro: 2.679 ± 1.017
2.009PheGln: 2.009 ± 1.413
0.67PheArg: 0.67 ± 0.463
2.009PheSer: 2.009 ± 1.388
4.689PheThr: 4.689 ± 1.862
4.019PheVal: 4.019 ± 1.378
0.67PheTrp: 0.67 ± 0.693
3.349PheTyr: 3.349 ± 1.136
0.0PheXaa: 0.0 ± 0.0
Gly
0.67GlyAla: 0.67 ± 0.463
0.67GlyCys: 0.67 ± 0.693
5.358GlyAsp: 5.358 ± 1.718
5.358GlyGlu: 5.358 ± 1.273
1.34GlyPhe: 1.34 ± 0.883
3.349GlyGly: 3.349 ± 0.971
1.34GlyHis: 1.34 ± 0.512
2.009GlyIle: 2.009 ± 0.908
4.019GlyLys: 4.019 ± 1.535
7.368GlyLeu: 7.368 ± 2.017
1.34GlyMet: 1.34 ± 0.925
1.34GlyAsn: 1.34 ± 0.925
0.67GlyPro: 0.67 ± 0.463
0.67GlyGln: 0.67 ± 0.674
1.34GlyArg: 1.34 ± 0.512
10.047GlySer: 10.047 ± 2.643
4.689GlyThr: 4.689 ± 1.99
5.358GlyVal: 5.358 ± 1.294
1.34GlyTrp: 1.34 ± 0.512
4.019GlyTyr: 4.019 ± 1.106
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
1.34HisAsp: 1.34 ± 0.883
0.67HisGlu: 0.67 ± 0.463
2.679HisPhe: 2.679 ± 1.281
0.67HisGly: 0.67 ± 0.463
0.67HisHis: 0.67 ± 0.463
2.679HisIle: 2.679 ± 1.467
1.34HisLys: 1.34 ± 0.695
0.67HisLeu: 0.67 ± 0.463
0.67HisMet: 0.67 ± 0.664
0.67HisAsn: 0.67 ± 0.463
0.0HisPro: 0.0 ± 0.0
0.67HisGln: 0.67 ± 0.75
0.67HisArg: 0.67 ± 0.463
0.67HisSer: 0.67 ± 0.547
0.0HisThr: 0.0 ± 0.0
2.009HisVal: 2.009 ± 1.274
1.34HisTrp: 1.34 ± 0.743
2.009HisTyr: 2.009 ± 1.319
0.0HisXaa: 0.0 ± 0.0
Ile
2.679IleAla: 2.679 ± 0.753
1.34IleCys: 1.34 ± 1.487
3.349IleAsp: 3.349 ± 1.667
4.019IleGlu: 4.019 ± 1.164
3.349IlePhe: 3.349 ± 1.139
2.679IleGly: 2.679 ± 0.753
0.67IleHis: 0.67 ± 0.75
2.679IleIle: 2.679 ± 1.023
6.698IleLys: 6.698 ± 1.263
2.679IleLeu: 2.679 ± 1.37
1.34IleMet: 1.34 ± 0.883
2.009IleAsn: 2.009 ± 0.912
2.679IlePro: 2.679 ± 1.023
0.67IleGln: 0.67 ± 0.674
3.349IleArg: 3.349 ± 0.917
4.019IleSer: 4.019 ± 1.61
4.689IleThr: 4.689 ± 1.57
6.028IleVal: 6.028 ± 1.897
0.0IleTrp: 0.0 ± 0.0
4.689IleTyr: 4.689 ± 2.509
0.0IleXaa: 0.0 ± 0.0
Lys
3.349LysAla: 3.349 ± 1.907
0.67LysCys: 0.67 ± 0.547
4.019LysAsp: 4.019 ± 1.299
5.358LysGlu: 5.358 ± 1.327
4.689LysPhe: 4.689 ± 1.205
6.698LysGly: 6.698 ± 0.689
2.009LysHis: 2.009 ± 0.953
2.009LysIle: 2.009 ± 1.076
7.368LysLys: 7.368 ± 3.648
6.028LysLeu: 6.028 ± 1.627
3.349LysMet: 3.349 ± 2.084
0.67LysAsn: 0.67 ± 0.705
4.019LysPro: 4.019 ± 1.035
3.349LysGln: 3.349 ± 2.582
4.689LysArg: 4.689 ± 1.498
2.679LysSer: 2.679 ± 1.099
4.019LysThr: 4.019 ± 1.172
3.349LysVal: 3.349 ± 1.124
0.67LysTrp: 0.67 ± 0.463
4.019LysTyr: 4.019 ± 1.504
0.0LysXaa: 0.0 ± 0.0
Leu
8.038LeuAla: 8.038 ± 2.174
2.679LeuCys: 2.679 ± 0.779
4.019LeuAsp: 4.019 ± 1.217
5.358LeuGlu: 5.358 ± 1.218
2.679LeuPhe: 2.679 ± 1.076
6.698LeuGly: 6.698 ± 1.451
0.0LeuHis: 0.0 ± 0.0
7.368LeuIle: 7.368 ± 1.913
10.047LeuLys: 10.047 ± 4.621
6.028LeuLeu: 6.028 ± 2.123
1.34LeuMet: 1.34 ± 0.527
5.358LeuAsn: 5.358 ± 1.908
6.028LeuPro: 6.028 ± 1.897
4.019LeuGln: 4.019 ± 1.868
2.009LeuArg: 2.009 ± 0.808
6.698LeuSer: 6.698 ± 1.178
3.349LeuThr: 3.349 ± 1.535
3.349LeuVal: 3.349 ± 1.665
1.34LeuTrp: 1.34 ± 0.883
5.358LeuTyr: 5.358 ± 1.629
0.0LeuXaa: 0.0 ± 0.0
Met
2.009MetAla: 2.009 ± 0.978
0.0MetCys: 0.0 ± 0.0
0.67MetAsp: 0.67 ± 0.705
0.0MetGlu: 0.0 ± 0.0
0.0MetPhe: 0.0 ± 0.0
1.34MetGly: 1.34 ± 0.66
0.0MetHis: 0.0 ± 0.0
2.009MetIle: 2.009 ± 0.964
1.34MetLys: 1.34 ± 0.883
2.679MetLeu: 2.679 ± 0.762
0.67MetMet: 0.67 ± 0.674
1.34MetAsn: 1.34 ± 0.695
1.34MetPro: 1.34 ± 0.925
1.34MetGln: 1.34 ± 1.036
2.009MetArg: 2.009 ± 0.757
2.679MetSer: 2.679 ± 1.023
1.34MetThr: 1.34 ± 1.385
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
4.689AsnAla: 4.689 ± 1.05
0.67AsnCys: 0.67 ± 0.547
2.679AsnAsp: 2.679 ± 1.017
2.009AsnGlu: 2.009 ± 1.288
2.679AsnPhe: 2.679 ± 0.913
2.009AsnGly: 2.009 ± 0.895
0.67AsnHis: 0.67 ± 0.743
2.679AsnIle: 2.679 ± 1.104
5.358AsnLys: 5.358 ± 0.874
6.028AsnLeu: 6.028 ± 1.58
0.0AsnMet: 0.0 ± 0.0
0.0AsnAsn: 0.0 ± 0.0
3.349AsnPro: 3.349 ± 1.06
3.349AsnGln: 3.349 ± 1.271
2.009AsnArg: 2.009 ± 0.953
6.028AsnSer: 6.028 ± 2.212
1.34AsnThr: 1.34 ± 1.071
5.358AsnVal: 5.358 ± 2.395
0.67AsnTrp: 0.67 ± 0.693
1.34AsnTyr: 1.34 ± 0.78
0.0AsnXaa: 0.0 ± 0.0
Pro
0.0ProAla: 0.0 ± 0.0
0.67ProCys: 0.67 ± 0.547
4.019ProAsp: 4.019 ± 1.373
2.679ProGlu: 2.679 ± 1.19
0.67ProPhe: 0.67 ± 0.463
6.028ProGly: 6.028 ± 1.529
0.67ProHis: 0.67 ± 0.547
2.679ProIle: 2.679 ± 1.281
0.0ProLys: 0.0 ± 0.0
4.019ProLeu: 4.019 ± 1.79
1.34ProMet: 1.34 ± 0.925
2.009ProAsn: 2.009 ± 0.964
0.67ProPro: 0.67 ± 0.463
3.349ProGln: 3.349 ± 1.586
1.34ProArg: 1.34 ± 1.094
4.689ProSer: 4.689 ± 1.403
1.34ProThr: 1.34 ± 0.925
2.679ProVal: 2.679 ± 0.868
0.67ProTrp: 0.67 ± 0.463
2.009ProTyr: 2.009 ± 0.833
0.0ProXaa: 0.0 ± 0.0
Gln
2.679GlnAla: 2.679 ± 0.928
0.0GlnCys: 0.0 ± 0.0
5.358GlnAsp: 5.358 ± 0.751
2.009GlnGlu: 2.009 ± 0.621
2.009GlnPhe: 2.009 ± 1.471
2.679GlnGly: 2.679 ± 0.98
2.009GlnHis: 2.009 ± 0.683
0.67GlnIle: 0.67 ± 0.743
4.689GlnLys: 4.689 ± 1.015
3.349GlnLeu: 3.349 ± 1.077
0.67GlnMet: 0.67 ± 0.705
1.34GlnAsn: 1.34 ± 0.512
0.0GlnPro: 0.0 ± 0.0
1.34GlnGln: 1.34 ± 0.976
1.34GlnArg: 1.34 ± 0.512
6.028GlnSer: 6.028 ± 2.347
2.009GlnThr: 2.009 ± 0.916
2.679GlnVal: 2.679 ± 0.995
0.0GlnTrp: 0.0 ± 0.0
2.679GlnTyr: 2.679 ± 1.287
0.0GlnXaa: 0.0 ± 0.0
Arg
1.34ArgAla: 1.34 ± 0.925
0.67ArgCys: 0.67 ± 0.547
2.009ArgAsp: 2.009 ± 1.284
0.0ArgGlu: 0.0 ± 0.0
2.009ArgPhe: 2.009 ± 0.657
2.009ArgGly: 2.009 ± 0.657
0.67ArgHis: 0.67 ± 0.463
3.349ArgIle: 3.349 ± 2.278
2.679ArgLys: 2.679 ± 1.281
2.679ArgLeu: 2.679 ± 1.461
0.67ArgMet: 0.67 ± 0.463
3.349ArgAsn: 3.349 ± 1.342
3.349ArgPro: 3.349 ± 1.271
0.67ArgGln: 0.67 ± 0.463
1.34ArgArg: 1.34 ± 1.029
3.349ArgSer: 3.349 ± 1.488
0.67ArgThr: 0.67 ± 0.693
0.67ArgVal: 0.67 ± 0.547
0.0ArgTrp: 0.0 ± 0.0
5.358ArgTyr: 5.358 ± 2.935
0.0ArgXaa: 0.0 ± 0.0
Ser
6.028SerAla: 6.028 ± 3.853
2.009SerCys: 2.009 ± 1.641
4.689SerAsp: 4.689 ± 1.901
3.349SerGlu: 3.349 ± 1.708
2.679SerPhe: 2.679 ± 0.952
4.019SerGly: 4.019 ± 1.29
1.34SerHis: 1.34 ± 0.925
6.698SerIle: 6.698 ± 1.937
4.019SerLys: 4.019 ± 1.505
10.717SerLeu: 10.717 ± 1.826
2.009SerMet: 2.009 ± 0.683
6.028SerAsn: 6.028 ± 1.45
2.009SerPro: 2.009 ± 0.953
4.019SerGln: 4.019 ± 1.33
1.34SerArg: 1.34 ± 0.662
7.368SerSer: 7.368 ± 3.122
4.689SerThr: 4.689 ± 0.78
6.028SerVal: 6.028 ± 2.016
0.67SerTrp: 0.67 ± 0.547
1.34SerTyr: 1.34 ± 0.78
0.0SerXaa: 0.0 ± 0.0
Thr
2.679ThrAla: 2.679 ± 1.325
0.0ThrCys: 0.0 ± 0.0
2.679ThrAsp: 2.679 ± 0.84
0.67ThrGlu: 0.67 ± 0.693
3.349ThrPhe: 3.349 ± 1.503
7.368ThrGly: 7.368 ± 1.63
0.0ThrHis: 0.0 ± 0.0
6.028ThrIle: 6.028 ± 2.075
3.349ThrLys: 3.349 ± 2.07
4.689ThrLeu: 4.689 ± 1.324
0.67ThrMet: 0.67 ± 0.463
2.009ThrAsn: 2.009 ± 0.911
2.009ThrPro: 2.009 ± 0.99
2.009ThrGln: 2.009 ± 0.757
3.349ThrArg: 3.349 ± 2.314
1.34ThrSer: 1.34 ± 0.979
3.349ThrThr: 3.349 ± 1.139
3.349ThrVal: 3.349 ± 1.063
0.67ThrTrp: 0.67 ± 0.463
1.34ThrTyr: 1.34 ± 0.851
0.0ThrXaa: 0.0 ± 0.0
Val
4.019ValAla: 4.019 ± 1.299
0.67ValCys: 0.67 ± 0.75
4.689ValAsp: 4.689 ± 0.919
3.349ValGlu: 3.349 ± 1.124
3.349ValPhe: 3.349 ± 1.08
4.019ValGly: 4.019 ± 2.49
4.019ValHis: 4.019 ± 0.807
0.67ValIle: 0.67 ± 0.674
4.689ValLys: 4.689 ± 1.6
6.698ValLeu: 6.698 ± 2.773
1.34ValMet: 1.34 ± 0.915
7.368ValAsn: 7.368 ± 2.32
4.019ValPro: 4.019 ± 1.79
1.34ValGln: 1.34 ± 0.695
1.34ValArg: 1.34 ± 0.851
7.368ValSer: 7.368 ± 1.822
2.679ValThr: 2.679 ± 0.846
4.689ValVal: 4.689 ± 1.876
0.0ValTrp: 0.0 ± 0.0
0.0ValTyr: 0.0 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.34TrpAla: 1.34 ± 0.512
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.67TrpGlu: 0.67 ± 0.463
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.67TrpHis: 0.67 ± 0.693
1.34TrpIle: 1.34 ± 0.662
0.67TrpLys: 0.67 ± 0.463
0.0TrpLeu: 0.0 ± 0.0
0.0TrpMet: 0.0 ± 0.0
1.34TrpAsn: 1.34 ± 1.094
0.0TrpPro: 0.0 ± 0.0
0.67TrpGln: 0.67 ± 0.705
0.67TrpArg: 0.67 ± 0.463
0.67TrpSer: 0.67 ± 0.705
2.009TrpThr: 2.009 ± 0.99
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.67TrpTyr: 0.67 ± 0.705
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.019TyrAla: 4.019 ± 0.968
0.67TyrCys: 0.67 ± 0.743
2.009TyrAsp: 2.009 ± 1.676
1.34TyrGlu: 1.34 ± 0.78
4.689TyrPhe: 4.689 ± 1.348
3.349TyrGly: 3.349 ± 1.563
1.34TyrHis: 1.34 ± 0.512
2.009TyrIle: 2.009 ± 1.026
1.34TyrLys: 1.34 ± 0.512
5.358TyrLeu: 5.358 ± 1.598
2.009TyrMet: 2.009 ± 0.657
2.009TyrAsn: 2.009 ± 0.964
0.67TyrPro: 0.67 ± 0.674
3.349TyrGln: 3.349 ± 0.979
4.019TyrArg: 4.019 ± 3.306
3.349TyrSer: 3.349 ± 0.952
3.349TyrThr: 3.349 ± 1.755
4.689TyrVal: 4.689 ± 0.949
0.67TyrTrp: 0.67 ± 0.463
2.679TyrTyr: 2.679 ± 0.941
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 7 proteins (1494 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski