Odocoileus virginianus papillomavirus 1 (DPV) (Deer papillomavirus)

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Deltapapillomavirus; Deltapapillomavirus 2

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P03117|VE1_OVPVD Replication protein E1 OS=Odocoileus virginianus papillomavirus 1 OX=2772504 GN=E1 PE=3 SV=2
MM1 pKa = 7.74PPLKK5 pKa = 9.91RR6 pKa = 11.84VKK8 pKa = 10.17RR9 pKa = 11.84ANPYY13 pKa = 10.57DD14 pKa = 3.99LYY16 pKa = 10.14RR17 pKa = 11.84TCKK20 pKa = 9.47RR21 pKa = 11.84WKK23 pKa = 9.5CPLMSFLKK31 pKa = 10.98VEE33 pKa = 4.52GKK35 pKa = 8.16TVADD39 pKa = 5.18KK40 pKa = 9.86YY41 pKa = 11.18CSMGSMGVYY50 pKa = 8.77WRR52 pKa = 11.84LALHH56 pKa = 6.52GSGRR60 pKa = 11.84PTQGGYY66 pKa = 10.17VPLRR70 pKa = 11.84GGGSSTSLSSRR81 pKa = 11.84GSGSSTSISRR91 pKa = 11.84PFAGGIPLEE100 pKa = 4.18TLEE103 pKa = 4.42TVGAFRR109 pKa = 11.84PGIIEE114 pKa = 3.95EE115 pKa = 4.24VAPTLEE121 pKa = 4.42GVLPDD126 pKa = 3.8APAVVTPEE134 pKa = 4.29AVPVDD139 pKa = 3.71QGLSGLDD146 pKa = 3.2VARR149 pKa = 11.84EE150 pKa = 4.1VTQEE154 pKa = 3.85SLITFLQPEE163 pKa = 4.94GPDD166 pKa = 3.93DD167 pKa = 3.69IAVLEE172 pKa = 4.23LRR174 pKa = 11.84PTEE177 pKa = 4.11HH178 pKa = 7.18DD179 pKa = 3.34QTHH182 pKa = 7.13LISTSTHH189 pKa = 6.26PNPLFHH195 pKa = 7.52APIQQSSIIAEE206 pKa = 4.2TSGSEE211 pKa = 4.03NIFVGGGGVGSTTGEE226 pKa = 4.18EE227 pKa = 3.98IEE229 pKa = 4.48LTLFGQPKK237 pKa = 8.73TSTPEE242 pKa = 3.79GPINRR247 pKa = 11.84GRR249 pKa = 11.84GIFNWFNRR257 pKa = 11.84TYY259 pKa = 8.2YY260 pKa = 8.89TQVPVEE266 pKa = 4.88DD267 pKa = 4.44PDD269 pKa = 4.14EE270 pKa = 4.1IAAAGSYY277 pKa = 9.78VFEE280 pKa = 4.31NALYY284 pKa = 10.27DD285 pKa = 3.81SKK287 pKa = 11.41AYY289 pKa = 9.72KK290 pKa = 10.18HH291 pKa = 6.08EE292 pKa = 3.99QQPWLSRR299 pKa = 11.84PQDD302 pKa = 3.38APEE305 pKa = 4.62FDD307 pKa = 3.81FQDD310 pKa = 3.69AVRR313 pKa = 11.84LLQGPSGRR321 pKa = 11.84VGWSRR326 pKa = 11.84IIRR329 pKa = 11.84PTSIGTRR336 pKa = 11.84SGVRR340 pKa = 11.84VGPLYY345 pKa = 10.53HH346 pKa = 6.78LRR348 pKa = 11.84QSFSTIDD355 pKa = 3.46EE356 pKa = 4.63PEE358 pKa = 4.32TIEE361 pKa = 5.52LIPSTVDD368 pKa = 3.0EE369 pKa = 4.78EE370 pKa = 4.5EE371 pKa = 4.36VLTGVPEE378 pKa = 4.27SAEE381 pKa = 4.24GPDD384 pKa = 4.57AEE386 pKa = 4.87YY387 pKa = 11.31SDD389 pKa = 5.7IDD391 pKa = 3.89LQSIGSDD398 pKa = 3.35EE399 pKa = 4.36PLLGTGIIYY408 pKa = 9.81PLVGGGQIFLCMHH421 pKa = 7.58RR422 pKa = 11.84APVGWSSGTYY432 pKa = 9.52INHH435 pKa = 6.77EE436 pKa = 4.14GQSRR440 pKa = 11.84DD441 pKa = 3.37DD442 pKa = 3.7GEE444 pKa = 4.34YY445 pKa = 10.93VIDD448 pKa = 5.49NGGQSNITPTVVIDD462 pKa = 3.74GSIALSLEE470 pKa = 4.25YY471 pKa = 10.11FRR473 pKa = 11.84HH474 pKa = 6.0YY475 pKa = 10.47YY476 pKa = 10.03LHH478 pKa = 7.25PSLLRR483 pKa = 11.84RR484 pKa = 11.84KK485 pKa = 9.7RR486 pKa = 11.84KK487 pKa = 9.64RR488 pKa = 11.84NPIFII493 pKa = 4.84

Molecular weight: 53.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P06925|VE4_OVPVD Probable protein E4 OS=Odocoileus virginianus papillomavirus 1 OX=2772504 GN=E4 PE=4 SV=1
GG1 pKa = 5.97ITIVLITHH9 pKa = 6.88ILRR12 pKa = 11.84PPTLEE17 pKa = 4.86RR18 pKa = 11.84PSKK21 pKa = 11.04DD22 pKa = 3.0CGTPGAVKK30 pKa = 10.12EE31 pKa = 4.38ADD33 pKa = 3.46PPTRR37 pKa = 11.84PTAPCFTLLLEE48 pKa = 4.5ATPFTVPSEE57 pKa = 3.98LAKK60 pKa = 10.34TGVGPLTARR69 pKa = 11.84LPTAHH74 pKa = 7.03HH75 pKa = 6.43SPRR78 pKa = 11.84GVAWAPIPPPRR89 pKa = 11.84CRR91 pKa = 11.84ARR93 pKa = 11.84YY94 pKa = 9.02RR95 pKa = 11.84RR96 pKa = 11.84TPGAYY101 pKa = 10.25LYY103 pKa = 7.52PTVLDD108 pKa = 3.46EE109 pKa = 4.21GRR111 pKa = 11.84RR112 pKa = 11.84ITRR115 pKa = 11.84RR116 pKa = 11.84RR117 pKa = 11.84QINTTT122 pKa = 3.32

Molecular weight: 13.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2429

35

613

303.6

33.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.175 ± 0.692

2.758 ± 0.744

5.105 ± 0.297

6.093 ± 0.318

3.541 ± 0.469

7.452 ± 0.876

2.594 ± 0.297

4.199 ± 0.62

4.446 ± 0.624

8.687 ± 0.383

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.811 ± 0.354

3.746 ± 0.571

7.369 ± 1.13

3.788 ± 0.262

6.175 ± 0.893

7.657 ± 0.706

7.122 ± 0.652

6.093 ± 0.303

1.688 ± 0.315

3.499 ± 0.5
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski