Salmonella phage slyngel

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Hanrivervirus; Salmonella virus slyngel

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 80 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G8RA07|A0A6G8RA07_9CAUD Putative helicase OS=Salmonella phage slyngel OX=2713321 GN=slyngel_55 PE=4 SV=1
MM1 pKa = 6.55MQSTVIKK8 pKa = 10.32FLGSDD13 pKa = 3.48CEE15 pKa = 4.22EE16 pKa = 4.06VNEE19 pKa = 4.66CFTAGKK25 pKa = 9.79RR26 pKa = 11.84YY27 pKa = 9.13HH28 pKa = 7.13ADD30 pKa = 2.88VSSAGNYY37 pKa = 8.25FVYY40 pKa = 10.17DD41 pKa = 3.53DD42 pKa = 5.7HH43 pKa = 8.4GDD45 pKa = 3.21TWVIDD50 pKa = 3.61QDD52 pKa = 4.07DD53 pKa = 4.13EE54 pKa = 4.46EE55 pKa = 5.24FSVEE59 pKa = 3.83

Molecular weight: 6.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G8RA05|A0A6G8RA05_9CAUD Uncharacterized protein OS=Salmonella phage slyngel OX=2713321 GN=slyngel_46 PE=4 SV=1
MM1 pKa = 7.74LEE3 pKa = 4.19LKK5 pKa = 10.36DD6 pKa = 3.44IRR8 pKa = 11.84VGTKK12 pKa = 9.97FRR14 pKa = 11.84VTWADD19 pKa = 3.79EE20 pKa = 4.17YY21 pKa = 11.34CGVSKK26 pKa = 10.82GQVVTVDD33 pKa = 4.35SIYY36 pKa = 10.76HH37 pKa = 5.68GCSKK41 pKa = 10.64DD42 pKa = 3.38FRR44 pKa = 11.84RR45 pKa = 11.84PRR47 pKa = 11.84IKK49 pKa = 10.15NGYY52 pKa = 9.12IITRR56 pKa = 11.84RR57 pKa = 11.84LGFDD61 pKa = 3.72HH62 pKa = 6.74YY63 pKa = 11.16CVVATQGVLIEE74 pKa = 4.4LEE76 pKa = 4.52RR77 pKa = 11.84ISDD80 pKa = 3.53HH81 pKa = 6.68RR82 pKa = 11.84GCHH85 pKa = 4.86VKK87 pKa = 9.66TMKK90 pKa = 10.33IPFLRR95 pKa = 11.84ARR97 pKa = 11.84YY98 pKa = 8.42DD99 pKa = 3.17ARR101 pKa = 11.84RR102 pKa = 11.84MRR104 pKa = 11.84RR105 pKa = 11.84LARR108 pKa = 11.84NAIKK112 pKa = 10.47LKK114 pKa = 10.62KK115 pKa = 9.46PGSALYY121 pKa = 8.45GTYY124 pKa = 10.32KK125 pKa = 10.88GIARR129 pKa = 11.84NAGKK133 pKa = 10.28

Molecular weight: 15.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

80

0

80

15180

43

1141

189.8

21.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.024 ± 0.412

1.37 ± 0.172

6.238 ± 0.272

6.647 ± 0.265

3.926 ± 0.167

7.569 ± 0.24

1.772 ± 0.218

6.765 ± 0.194

7.385 ± 0.375

6.397 ± 0.205

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.136 ± 0.177

4.743 ± 0.209

3.379 ± 0.201

3.999 ± 0.275

5.0 ± 0.202

6.14 ± 0.269

5.402 ± 0.247

6.93 ± 0.234

1.456 ± 0.106

3.722 ± 0.147
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski