Acinetobacter phage vB_AbaM_phiAbaA1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Saclayvirus; unclassified Saclayvirus

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 165 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A126DI51|A0A126DI51_9CAUD Terminase large subunit OS=Acinetobacter phage vB_AbaM_phiAbaA1 OX=1605379 GN=phiAbaA1_027 PE=4 SV=1
MM1 pKa = 7.86EE2 pKa = 6.49DD3 pKa = 5.4DD4 pKa = 3.8EE5 pKa = 5.82DD6 pKa = 3.78LTIVVVAIIAMIIYY20 pKa = 10.15IGIAYY25 pKa = 8.65FFLKK29 pKa = 7.89TTMGAFVLYY38 pKa = 10.65SLFGVILL45 pKa = 3.86

Molecular weight: 5.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A126DIU3|A0A126DIU3_9CAUD Uncharacterized protein OS=Acinetobacter phage vB_AbaM_phiAbaA1 OX=1605379 GN=phiAbaA1_075 PE=4 SV=1
MM1 pKa = 7.65VITLIKK7 pKa = 10.05IIFIVFYY14 pKa = 8.85FINVACEE21 pKa = 3.46VSNRR25 pKa = 11.84YY26 pKa = 8.93RR27 pKa = 11.84DD28 pKa = 3.89CKK30 pKa = 8.68MHH32 pKa = 5.48VAVRR36 pKa = 11.84YY37 pKa = 7.2TFMVASAIAYY47 pKa = 6.69TKK49 pKa = 10.38IGVLATAPLVVQISALIIVIFLAKK73 pKa = 10.28FLYY76 pKa = 10.63DD77 pKa = 3.48HH78 pKa = 5.86VLKK81 pKa = 10.77RR82 pKa = 11.84QIRR85 pKa = 11.84IKK87 pKa = 10.75NFRR90 pKa = 11.84LKK92 pKa = 10.46KK93 pKa = 10.36LYY95 pKa = 10.49LSEE98 pKa = 4.32SARR101 pKa = 11.84KK102 pKa = 8.78PSHH105 pKa = 5.9KK106 pKa = 10.31LNRR109 pKa = 11.84RR110 pKa = 3.35

Molecular weight: 12.83 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

165

0

165

31583

31

3259

191.4

21.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.529 ± 0.395

1.172 ± 0.122

6.519 ± 0.16

7.023 ± 0.327

4.341 ± 0.173

6.766 ± 0.19

1.824 ± 0.154

6.659 ± 0.173

7.855 ± 0.27

7.862 ± 0.193

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.672 ± 0.127

5.18 ± 0.183

2.843 ± 0.116

3.35 ± 0.175

4.392 ± 0.178

6.323 ± 0.179

5.965 ± 0.373

7.21 ± 0.211

1.374 ± 0.07

4.141 ± 0.145
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski