Raccoon polyomavirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Alphapolyomavirus; Procyon lotor polyomavirus 1

Average proteome isoelectric point is 5.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|J7FZP3|J7FZP3_9POLY Small T antigen OS=Raccoon polyomavirus OX=1219896 PE=4 SV=1
MM1 pKa = 7.61GGFLSLFLSLGEE13 pKa = 4.12IVAEE17 pKa = 4.54LSATTGIAVEE27 pKa = 4.59SILTGEE33 pKa = 4.08ALAAIEE39 pKa = 4.54AEE41 pKa = 4.55VGSLMTVEE49 pKa = 4.24GLSGIEE55 pKa = 4.24ALSQLGFTAEE65 pKa = 3.99QFSNFSLVSSLVNQAAGYY83 pKa = 10.27GVFAQTLSGISALVGAGIKK102 pKa = 10.05LALDD106 pKa = 3.54EE107 pKa = 4.36QSTVNHH113 pKa = 6.32NLYY116 pKa = 10.61SLSAAKK122 pKa = 10.27RR123 pKa = 11.84EE124 pKa = 4.06EE125 pKa = 3.82EE126 pKa = 3.73RR127 pKa = 11.84LVNNGIQKK135 pKa = 10.3LSWSFGLDD143 pKa = 3.29PLNWDD148 pKa = 3.11QSLLHH153 pKa = 6.59AVGKK157 pKa = 8.74SVWEE161 pKa = 4.2GLQKK165 pKa = 10.8HH166 pKa = 6.3PGVNHH171 pKa = 6.27VYY173 pKa = 11.03SNLEE177 pKa = 3.55ALLRR181 pKa = 11.84QARR184 pKa = 11.84WVVKK188 pKa = 10.49RR189 pKa = 11.84EE190 pKa = 4.06STSALPHH197 pKa = 5.85QIGEE201 pKa = 4.29VIHH204 pKa = 6.24FFEE207 pKa = 4.89SHH209 pKa = 4.13VHH211 pKa = 5.79SNGVPDD217 pKa = 3.82WLLPLILGLKK227 pKa = 9.78GDD229 pKa = 4.26PTPAWHH235 pKa = 6.77HH236 pKa = 6.66LEE238 pKa = 4.89DD239 pKa = 4.73GPP241 pKa = 5.13

Molecular weight: 25.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|J7G293|J7G293_9POLY Capsid protein VP1 OS=Raccoon polyomavirus OX=1219896 PE=3 SV=1
MM1 pKa = 7.61DD2 pKa = 3.8TVLTSSEE9 pKa = 3.81RR10 pKa = 11.84RR11 pKa = 11.84EE12 pKa = 4.07LCSLLEE18 pKa = 5.16LDD20 pKa = 3.79PQLWGNIPVMRR31 pKa = 11.84NCYY34 pKa = 9.85KK35 pKa = 10.56KK36 pKa = 10.66SCLKK40 pKa = 9.51YY41 pKa = 10.58HH42 pKa = 7.1PDD44 pKa = 4.22KK45 pKa = 11.65GGDD48 pKa = 3.52GQKK51 pKa = 9.18MVRR54 pKa = 11.84LNEE57 pKa = 3.53LWARR61 pKa = 11.84ATEE64 pKa = 3.93NLTRR68 pKa = 11.84LRR70 pKa = 11.84EE71 pKa = 4.15DD72 pKa = 3.64CGFQVSDD79 pKa = 4.57PLEE82 pKa = 4.52SSPKK86 pKa = 9.86TLMAHH91 pKa = 7.39LGSTWKK97 pKa = 10.76SKK99 pKa = 9.5FCKK102 pKa = 10.61GPTCRR107 pKa = 11.84INMKK111 pKa = 9.52PAYY114 pKa = 8.95CSCITCRR121 pKa = 11.84LYY123 pKa = 10.72KK124 pKa = 9.79QHH126 pKa = 6.58QAIKK130 pKa = 9.22KK131 pKa = 8.1KK132 pKa = 10.25KK133 pKa = 9.61KK134 pKa = 9.54RR135 pKa = 11.84RR136 pKa = 11.84CLVWGQCFCFSCYY149 pKa = 10.08LHH151 pKa = 6.89WFGFPNTWCFFDD163 pKa = 2.76WWMTLILEE171 pKa = 4.46TDD173 pKa = 3.75LNLLNLKK180 pKa = 8.94FCKK183 pKa = 10.57YY184 pKa = 10.2EE185 pKa = 3.71FLNIKK190 pKa = 9.42NFPYY194 pKa = 10.63QNASLMTFSLQDD206 pKa = 3.31EE207 pKa = 4.47PPIYY211 pKa = 8.89GTPAFRR217 pKa = 11.84EE218 pKa = 3.82WWFYY222 pKa = 8.63QQNLYY227 pKa = 8.28TWSHH231 pKa = 7.2DD232 pKa = 3.76GPSTSSSSGRR242 pKa = 11.84SRR244 pKa = 11.84RR245 pKa = 11.84WDD247 pKa = 3.09SSRR250 pKa = 11.84DD251 pKa = 3.33HH252 pKa = 7.56GEE254 pKa = 3.7FAGGEE259 pKa = 4.31GSSGRR264 pKa = 11.84DD265 pKa = 2.49RR266 pKa = 11.84VHH268 pKa = 6.27TSKK271 pKa = 10.91SSTSMPSHH279 pKa = 6.75RR280 pKa = 11.84PHH282 pKa = 7.61SSANLHH288 pKa = 6.43GDD290 pKa = 3.19NSEE293 pKa = 4.76DD294 pKa = 3.56PLFCEE299 pKa = 4.55EE300 pKa = 4.79TLDD303 pKa = 4.59SSPSPPPSPAADD315 pKa = 3.29PHH317 pKa = 6.39TFTSSQSSTPSSAFGFSSQTSTPSNASQGDD347 pKa = 3.73SRR349 pKa = 11.84TTGPHH354 pKa = 6.82PNTPSPRR361 pKa = 11.84RR362 pKa = 11.84RR363 pKa = 11.84KK364 pKa = 9.68HH365 pKa = 6.68RR366 pKa = 11.84EE367 pKa = 3.62DD368 pKa = 4.32HH369 pKa = 6.03PTSPYY374 pKa = 10.89ASGGSFSSTPPKK386 pKa = 10.22SKK388 pKa = 10.48KK389 pKa = 9.75PRR391 pKa = 11.84DD392 pKa = 3.68SFSPLDD398 pKa = 3.86FPSDD402 pKa = 3.92LLDD405 pKa = 3.97CLSRR409 pKa = 11.84ATLSNKK415 pKa = 6.74TQNAFLIFSTKK426 pKa = 10.25EE427 pKa = 4.09KK428 pKa = 11.02VCLLYY433 pKa = 10.96DD434 pKa = 3.69KK435 pKa = 10.93TDD437 pKa = 3.34DD438 pKa = 3.64KK439 pKa = 11.77YY440 pKa = 11.15KK441 pKa = 10.97VEE443 pKa = 4.75FKK445 pKa = 10.83SLHH448 pKa = 5.95KK449 pKa = 10.4YY450 pKa = 10.31KK451 pKa = 10.69NGSGFLFIILLTKK464 pKa = 10.51HH465 pKa = 5.81RR466 pKa = 11.84VTAIKK471 pKa = 10.31NFCAQFCTISFLLCKK486 pKa = 10.32AVIQPVQCYY495 pKa = 10.44DD496 pKa = 3.88RR497 pKa = 11.84LCKK500 pKa = 10.45DD501 pKa = 3.5PYY503 pKa = 11.04TFLKK507 pKa = 10.72ANKK510 pKa = 9.24CGIFEE515 pKa = 4.87GEE517 pKa = 4.05FAEE520 pKa = 5.58QKK522 pKa = 11.05DD523 pKa = 4.08PTCDD527 pKa = 2.81WNQIADD533 pKa = 3.69FALAHH538 pKa = 6.57LLDD541 pKa = 5.23DD542 pKa = 4.75PLLILAHH549 pKa = 6.32YY550 pKa = 10.43LDD552 pKa = 4.75FSKK555 pKa = 11.0PPGNCTKK562 pKa = 10.69CLTGKK567 pKa = 9.6GLKK570 pKa = 9.81AHH572 pKa = 7.12ADD574 pKa = 3.28HH575 pKa = 7.36AKK577 pKa = 10.06EE578 pKa = 3.97HH579 pKa = 7.27DD580 pKa = 3.61NAKK583 pKa = 10.59LFIKK587 pKa = 10.53SKK589 pKa = 7.7SQKK592 pKa = 10.37SICQQAADD600 pKa = 3.91VVCAKK605 pKa = 10.26KK606 pKa = 10.33RR607 pKa = 11.84LAMLEE612 pKa = 3.9QTRR615 pKa = 11.84TEE617 pKa = 3.83MLEE620 pKa = 3.91EE621 pKa = 4.21KK622 pKa = 10.06FRR624 pKa = 11.84KK625 pKa = 9.03QLAILKK631 pKa = 8.53EE632 pKa = 4.01LEE634 pKa = 4.42VIDD637 pKa = 4.12LHH639 pKa = 7.72LILGGVAWYY648 pKa = 10.89SVMFQNFADD657 pKa = 3.85MLKK660 pKa = 10.99GLLQLFTDD668 pKa = 5.11NIPKK672 pKa = 9.87KK673 pKa = 10.48RR674 pKa = 11.84NALFIGPINSGKK686 pKa = 9.01TSFAAALIDD695 pKa = 4.06LLEE698 pKa = 4.55GKK700 pKa = 9.48ALNINCPADD709 pKa = 3.44KK710 pKa = 11.2LNFEE714 pKa = 5.12LGCALDD720 pKa = 4.22LFMVCFEE727 pKa = 4.54DD728 pKa = 4.66VKK730 pKa = 11.12GSKK733 pKa = 10.18CSNKK737 pKa = 9.93DD738 pKa = 3.46LQSGQGMNNLDD749 pKa = 3.96NLRR752 pKa = 11.84DD753 pKa = 3.82HH754 pKa = 7.19MDD756 pKa = 3.48GAVPVQLEE764 pKa = 4.09RR765 pKa = 11.84KK766 pKa = 7.96HH767 pKa = 5.02QNKK770 pKa = 9.65RR771 pKa = 11.84SQIFPPCIVTCNEE784 pKa = 3.8YY785 pKa = 10.82YY786 pKa = 10.22IPGTVATRR794 pKa = 11.84FAQTLTFAIKK804 pKa = 10.53LCLKK808 pKa = 10.77NSIEE812 pKa = 4.62KK813 pKa = 10.31NILMQQKK820 pKa = 9.41RR821 pKa = 11.84VLQRR825 pKa = 11.84GCTLLMALIWLLPLDD840 pKa = 4.91DD841 pKa = 4.97FSDD844 pKa = 5.29GIRR847 pKa = 11.84SDD849 pKa = 3.65VKK851 pKa = 10.53DD852 pKa = 3.94FKK854 pKa = 11.38GAVEE858 pKa = 4.68GDD860 pKa = 4.03VGWATYY866 pKa = 10.76QKK868 pKa = 9.69MVEE871 pKa = 4.15NVEE874 pKa = 4.54NGDD877 pKa = 4.04DD878 pKa = 3.7PMKK881 pKa = 11.03GILEE885 pKa = 4.03QDD887 pKa = 3.35NEE889 pKa = 4.16QDD891 pKa = 4.13NEE893 pKa = 4.29DD894 pKa = 3.62VDD896 pKa = 4.31SGRR899 pKa = 11.84FTQQ902 pKa = 4.71

Molecular weight: 102.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2496

196

902

499.2

55.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.849 ± 0.571

2.965 ± 0.668

6.13 ± 0.718

5.369 ± 0.517

4.728 ± 0.579

6.771 ± 0.801

2.845 ± 0.338

4.327 ± 0.473

7.011 ± 0.765

10.617 ± 0.797

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.963 ± 0.267

4.607 ± 0.126

5.769 ± 0.605

4.207 ± 0.226

4.006 ± 0.415

8.534 ± 0.695

5.529 ± 0.446

4.728 ± 1.06

1.683 ± 0.216

2.364 ± 0.354
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski