Paenibacillus selenitireducens

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6187 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T2XEY6|A0A1T2XEY6_9BACL NTP pyrophosphohydrolase OS=Paenibacillus selenitireducens OX=1324314 GN=BVG16_10965 PE=3 SV=1
MM1 pKa = 7.54ANIIDD6 pKa = 4.43FDD8 pKa = 4.0DD9 pKa = 5.62AEE11 pKa = 4.39YY12 pKa = 10.75SWLVSDD18 pKa = 4.19IATPLFYY25 pKa = 10.02EE26 pKa = 4.78IPIPWVLSALYY37 pKa = 10.12RR38 pKa = 11.84SRR40 pKa = 11.84DD41 pKa = 3.42FNAPDD46 pKa = 3.05WSEE49 pKa = 3.35WDD51 pKa = 3.28EE52 pKa = 3.95QTRR55 pKa = 11.84RR56 pKa = 11.84FYY58 pKa = 11.43YY59 pKa = 10.74FNLLNNTPYY68 pKa = 10.52IDD70 pKa = 3.53MDD72 pKa = 4.1FSRR75 pKa = 11.84MM76 pKa = 3.55

Molecular weight: 9.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T2XGJ5|A0A1T2XGJ5_9BACL Ribosomal RNA small subunit methyltransferase G OS=Paenibacillus selenitireducens OX=1324314 GN=rsmG PE=3 SV=1
MM1 pKa = 7.9RR2 pKa = 11.84PTFKK6 pKa = 10.82PNVSKK11 pKa = 10.8RR12 pKa = 11.84KK13 pKa = 8.95KK14 pKa = 8.25VHH16 pKa = 5.49GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTKK25 pKa = 10.18NGRR28 pKa = 11.84KK29 pKa = 8.87VLAARR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.63GRR39 pKa = 11.84NKK41 pKa = 10.41LSAA44 pKa = 3.84

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6187

0

6187

1956302

26

3156

316.2

35.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.491 ± 0.033

0.796 ± 0.008

5.222 ± 0.025

6.559 ± 0.034

4.255 ± 0.025

6.935 ± 0.031

2.326 ± 0.019

7.353 ± 0.029

5.581 ± 0.03

9.738 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.064 ± 0.015

4.053 ± 0.021

3.846 ± 0.018

4.259 ± 0.022

4.659 ± 0.026

6.24 ± 0.023

5.602 ± 0.027

7.064 ± 0.024

1.291 ± 0.013

3.664 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski