Mizuhopecten yessoensis (Japanese scallop) (Patinopecten yessoensis)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Pectinida; Pectinoidea; Pectinidae; Mizuhopecten

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 22409 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A210PL05|A0A210PL05_MIZYE Pleckstrin homology domain-containing family G member 5 OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT21310 PE=4 SV=1
MM1 pKa = 7.5LNVCKK6 pKa = 10.36IIPPFSRR13 pKa = 11.84SVQSWVGDD21 pKa = 3.67VICIGTLLIVRR32 pKa = 11.84RR33 pKa = 11.84QSRR36 pKa = 11.84DD37 pKa = 2.55GDD39 pKa = 4.12VICIGILLIVRR50 pKa = 11.84RR51 pKa = 11.84QSWDD55 pKa = 2.99GDD57 pKa = 4.13VICIDD62 pKa = 4.12GDD64 pKa = 4.02IICIDD69 pKa = 3.81GDD71 pKa = 4.44VICLGILLIVRR82 pKa = 11.84RR83 pKa = 11.84QSWDD87 pKa = 3.24GNVICIDD94 pKa = 3.76GDD96 pKa = 4.1VICIDD101 pKa = 4.12GDD103 pKa = 4.15VICIDD108 pKa = 3.61VDD110 pKa = 4.17VICIDD115 pKa = 4.15GDD117 pKa = 3.89INCIDD122 pKa = 4.32GDD124 pKa = 4.4VICIDD129 pKa = 3.83GDD131 pKa = 3.99IICILIFLIVRR142 pKa = 11.84RR143 pKa = 11.84QSMDD147 pKa = 2.86GDD149 pKa = 4.34VICIDD154 pKa = 4.21GDD156 pKa = 3.98VLCIDD161 pKa = 4.62GDD163 pKa = 4.29VICIDD168 pKa = 4.12GDD170 pKa = 4.15VICIDD175 pKa = 3.61VDD177 pKa = 4.17VICIDD182 pKa = 4.88GDD184 pKa = 4.22IIWIDD189 pKa = 3.43GDD191 pKa = 4.44VICLGILLIVRR202 pKa = 11.84RR203 pKa = 11.84QSWAGDD209 pKa = 3.69VICIDD214 pKa = 4.1GDD216 pKa = 4.0IICIGIFLIVRR227 pKa = 11.84RR228 pKa = 11.84QSRR231 pKa = 11.84DD232 pKa = 2.62GDD234 pKa = 4.15VICIDD239 pKa = 4.12GDD241 pKa = 4.11VICIDD246 pKa = 3.83GDD248 pKa = 3.99IICILIFLIVRR259 pKa = 11.84RR260 pKa = 11.84QSMDD264 pKa = 2.86GDD266 pKa = 4.34VICIDD271 pKa = 3.95GDD273 pKa = 4.07VICIRR278 pKa = 11.84IFLIVRR284 pKa = 11.84RR285 pKa = 11.84QSWDD289 pKa = 2.8GDD291 pKa = 3.82VIYY294 pKa = 10.39IGILLIVRR302 pKa = 11.84RR303 pKa = 11.84QSWDD307 pKa = 2.89GDD309 pKa = 4.1VICIRR314 pKa = 11.84ILLIVRR320 pKa = 11.84RR321 pKa = 11.84QSWDD325 pKa = 2.86GDD327 pKa = 4.11VII329 pKa = 4.0

Molecular weight: 36.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A210PP45|A0A210PP45_MIZYE Multidrug resistance-associated protein 7 OS=Mizuhopecten yessoensis OX=6573 GN=KP79_PYT10635 PE=4 SV=1
MM1 pKa = 7.27RR2 pKa = 11.84TIGTMTMRR10 pKa = 11.84TIGTMSVRR18 pKa = 11.84TIGTMTMRR26 pKa = 11.84TIGTMTMRR34 pKa = 11.84TIGTMSVRR42 pKa = 11.84TIGTMTMRR50 pKa = 11.84TIGTMTMRR58 pKa = 11.84TIGTMSVRR66 pKa = 11.84TIGTMTMRR74 pKa = 11.84TIGTMTMRR82 pKa = 11.84TIGKK86 pKa = 8.59MSVRR90 pKa = 11.84TIGTMTLRR98 pKa = 11.84KK99 pKa = 9.37IGQQ102 pKa = 3.19

Molecular weight: 11.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

22409

0

22409

11322112

45

18501

505.2

56.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.426 ± 0.015

2.263 ± 0.021

5.907 ± 0.018

5.986 ± 0.024

3.702 ± 0.015

5.986 ± 0.034

2.611 ± 0.014

5.423 ± 0.018

6.105 ± 0.023

8.483 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.717 ± 0.011

4.828 ± 0.017

4.907 ± 0.022

4.266 ± 0.018

5.095 ± 0.021

8.364 ± 0.029

6.851 ± 0.029

6.683 ± 0.023

1.069 ± 0.008

3.325 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski