Dictyobacter kobayashii

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Ktedonobacteria; Ktedonobacterales; Dictyobacteraceae; Dictyobacter

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8237 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A402APW9|A0A402APW9_9CHLR Uncharacterized protein OS=Dictyobacter kobayashii OX=2014872 GN=KDK_49670 PE=3 SV=1
MM1 pKa = 7.85ADD3 pKa = 3.75LAAVAYY9 pKa = 7.22EE10 pKa = 4.36AYY12 pKa = 10.68VEE14 pKa = 4.51GINPIGWGDD23 pKa = 3.63FGEE26 pKa = 4.29DD27 pKa = 3.03HH28 pKa = 6.68VGLVGVDD35 pKa = 3.7LGADD39 pKa = 3.59EE40 pKa = 4.67SQAFAGTPDD49 pKa = 3.99MGVDD53 pKa = 3.08WHH55 pKa = 7.16DD56 pKa = 3.44VASKK60 pKa = 11.03VEE62 pKa = 3.91EE63 pKa = 4.17HH64 pKa = 7.15DD65 pKa = 3.61AGGGFGAYY73 pKa = 9.65SGQLLL78 pKa = 3.72

Molecular weight: 8.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A402AJI0|A0A402AJI0_9CHLR Phosphate-binding protein OS=Dictyobacter kobayashii OX=2014872 GN=KDK_30240 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.45RR3 pKa = 11.84TWQPKK8 pKa = 8.26RR9 pKa = 11.84IPRR12 pKa = 11.84KK13 pKa = 9.21RR14 pKa = 11.84EE15 pKa = 3.41HH16 pKa = 7.15GFMKK20 pKa = 10.47RR21 pKa = 11.84MSTRR25 pKa = 11.84NGRR28 pKa = 11.84RR29 pKa = 11.84VLKK32 pKa = 10.37SRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.48GRR39 pKa = 11.84WSLTVV44 pKa = 3.02

Molecular weight: 5.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8237

0

8237

2351450

39

2887

285.5

31.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.351 ± 0.031

0.989 ± 0.009

4.768 ± 0.021

5.679 ± 0.036

3.657 ± 0.021

6.988 ± 0.028

2.581 ± 0.015

6.089 ± 0.023

3.371 ± 0.02

10.976 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.329 ± 0.011

3.496 ± 0.025

5.086 ± 0.019

5.291 ± 0.025

5.835 ± 0.027

6.17 ± 0.022

5.957 ± 0.025

6.686 ± 0.025

1.518 ± 0.014

3.184 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski