Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_162

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
10.395AlaAla: 10.395 ± 5.175
1.386AlaCys: 1.386 ± 0.64
4.851AlaAsp: 4.851 ± 1.214
7.623AlaGlu: 7.623 ± 3.847
3.465AlaPhe: 3.465 ± 2.397
2.772AlaGly: 2.772 ± 0.602
0.0AlaHis: 0.0 ± 0.0
1.386AlaIle: 1.386 ± 0.64
6.237AlaLys: 6.237 ± 3.111
5.544AlaLeu: 5.544 ± 3.286
0.693AlaMet: 0.693 ± 0.522
4.158AlaAsn: 4.158 ± 2.027
3.465AlaPro: 3.465 ± 1.153
6.93AlaGln: 6.93 ± 2.89
4.851AlaArg: 4.851 ± 2.517
9.009AlaSer: 9.009 ± 7.016
8.316AlaThr: 8.316 ± 2.515
6.237AlaVal: 6.237 ± 2.143
3.465AlaTrp: 3.465 ± 1.62
2.079AlaTyr: 2.079 ± 0.929
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.693CysAsp: 0.693 ± 0.522
1.386CysGlu: 1.386 ± 0.954
0.0CysPhe: 0.0 ± 0.0
0.693CysGly: 0.693 ± 0.748
0.0CysHis: 0.0 ± 0.0
0.693CysIle: 0.693 ± 0.522
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
1.386CysMet: 1.386 ± 0.64
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
1.386CysArg: 1.386 ± 0.64
0.693CysSer: 0.693 ± 0.885
0.693CysThr: 0.693 ± 0.748
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.386CysTyr: 1.386 ± 0.64
0.0CysXaa: 0.0 ± 0.0
Asp
5.544AspAla: 5.544 ± 0.996
0.0AspCys: 0.0 ± 0.0
2.079AspAsp: 2.079 ± 1.89
5.544AspGlu: 5.544 ± 0.675
0.693AspPhe: 0.693 ± 0.522
1.386AspGly: 1.386 ± 0.954
1.386AspHis: 1.386 ± 1.044
2.772AspIle: 2.772 ± 1.284
4.158AspLys: 4.158 ± 1.728
4.851AspLeu: 4.851 ± 0.828
3.465AspMet: 3.465 ± 1.24
2.079AspAsn: 2.079 ± 1.256
0.0AspPro: 0.0 ± 0.0
2.079AspGln: 2.079 ± 0.896
2.079AspArg: 2.079 ± 0.748
2.772AspSer: 2.772 ± 0.965
1.386AspThr: 1.386 ± 0.691
3.465AspVal: 3.465 ± 0.897
0.0AspTrp: 0.0 ± 0.0
2.772AspTyr: 2.772 ± 0.877
0.0AspXaa: 0.0 ± 0.0
Glu
9.009GluAla: 9.009 ± 3.152
0.693GluCys: 0.693 ± 0.748
2.772GluAsp: 2.772 ± 0.602
6.93GluGlu: 6.93 ± 2.703
2.079GluPhe: 2.079 ± 0.748
6.237GluGly: 6.237 ± 2.504
2.079GluHis: 2.079 ± 0.748
6.93GluIle: 6.93 ± 3.109
7.623GluLys: 7.623 ± 3.135
6.237GluLeu: 6.237 ± 2.31
1.386GluMet: 1.386 ± 0.8
5.544GluAsn: 5.544 ± 2.787
1.386GluPro: 1.386 ± 0.64
2.772GluGln: 2.772 ± 2.189
2.079GluArg: 2.079 ± 0.896
4.158GluSer: 4.158 ± 2.44
2.079GluThr: 2.079 ± 1.89
2.079GluVal: 2.079 ± 0.539
3.465GluTrp: 3.465 ± 0.934
5.544GluTyr: 5.544 ± 1.437
0.0GluXaa: 0.0 ± 0.0
Phe
2.772PheAla: 2.772 ± 1.418
1.386PheCys: 1.386 ± 0.953
2.772PheAsp: 2.772 ± 0.971
1.386PheGlu: 1.386 ± 1.163
0.693PhePhe: 0.693 ± 0.522
2.079PheGly: 2.079 ± 0.836
0.0PheHis: 0.0 ± 0.0
1.386PheIle: 1.386 ± 0.806
1.386PheLys: 1.386 ± 0.64
0.693PheLeu: 0.693 ± 0.748
3.465PheMet: 3.465 ± 1.17
0.693PheAsn: 0.693 ± 0.843
0.693PhePro: 0.693 ± 0.522
0.693PheGln: 0.693 ± 0.806
2.772PheArg: 2.772 ± 1.144
2.079PheSer: 2.079 ± 1.566
2.772PheThr: 2.772 ± 0.869
0.693PheVal: 0.693 ± 0.806
0.0PheTrp: 0.0 ± 0.0
2.772PheTyr: 2.772 ± 1.107
0.0PheXaa: 0.0 ± 0.0
Gly
3.465GlyAla: 3.465 ± 1.448
0.0GlyCys: 0.0 ± 0.0
2.079GlyAsp: 2.079 ± 1.158
5.544GlyGlu: 5.544 ± 2.043
1.386GlyPhe: 1.386 ± 0.806
5.544GlyGly: 5.544 ± 1.847
0.0GlyHis: 0.0 ± 0.0
5.544GlyIle: 5.544 ± 1.869
5.544GlyLys: 5.544 ± 1.519
4.158GlyLeu: 4.158 ± 0.893
2.772GlyMet: 2.772 ± 1.486
2.772GlyAsn: 2.772 ± 1.672
0.693GlyPro: 0.693 ± 0.522
2.772GlyGln: 2.772 ± 2.189
2.772GlyArg: 2.772 ± 1.787
9.702GlySer: 9.702 ± 5.076
4.158GlyThr: 4.158 ± 1.596
2.079GlyVal: 2.079 ± 0.929
0.693GlyTrp: 0.693 ± 0.522
2.079GlyTyr: 2.079 ± 0.986
0.0GlyXaa: 0.0 ± 0.0
His
0.0HisAla: 0.0 ± 0.0
0.0HisCys: 0.0 ± 0.0
1.386HisAsp: 1.386 ± 0.954
0.693HisGlu: 0.693 ± 0.748
1.386HisPhe: 1.386 ± 1.044
1.386HisGly: 1.386 ± 0.691
0.693HisHis: 0.693 ± 0.522
0.0HisIle: 0.0 ± 0.0
0.693HisLys: 0.693 ± 0.522
0.0HisLeu: 0.0 ± 0.0
0.693HisMet: 0.693 ± 0.467
0.0HisAsn: 0.0 ± 0.0
0.0HisPro: 0.0 ± 0.0
0.0HisGln: 0.0 ± 0.0
2.079HisArg: 2.079 ± 1.513
0.693HisSer: 0.693 ± 0.522
0.0HisThr: 0.0 ± 0.0
0.693HisVal: 0.693 ± 0.748
1.386HisTrp: 1.386 ± 1.044
2.079HisTyr: 2.079 ± 1.291
0.0HisXaa: 0.0 ± 0.0
Ile
4.158IleAla: 4.158 ± 1.508
0.693IleCys: 0.693 ± 0.522
4.158IleAsp: 4.158 ± 1.754
2.772IleGlu: 2.772 ± 0.869
2.079IlePhe: 2.079 ± 1.764
6.237IleGly: 6.237 ± 1.319
0.693IleHis: 0.693 ± 0.806
1.386IleIle: 1.386 ± 0.64
2.772IleLys: 2.772 ± 0.973
3.465IleLeu: 3.465 ± 1.328
1.386IleMet: 1.386 ± 1.164
4.851IleAsn: 4.851 ± 1.071
5.544IlePro: 5.544 ± 1.609
3.465IleGln: 3.465 ± 1.397
3.465IleArg: 3.465 ± 1.417
4.851IleSer: 4.851 ± 1.452
4.158IleThr: 4.158 ± 2.072
2.772IleVal: 2.772 ± 1.908
0.693IleTrp: 0.693 ± 0.748
6.93IleTyr: 6.93 ± 1.422
0.0IleXaa: 0.0 ± 0.0
Lys
8.316LysAla: 8.316 ± 2.498
0.0LysCys: 0.0 ± 0.0
4.158LysAsp: 4.158 ± 1.292
4.851LysGlu: 4.851 ± 1.286
4.158LysPhe: 4.158 ± 2.108
4.158LysGly: 4.158 ± 1.817
0.0LysHis: 0.0 ± 0.0
7.623LysIle: 7.623 ± 2.406
4.851LysLys: 4.851 ± 2.292
2.079LysLeu: 2.079 ± 0.748
2.079LysMet: 2.079 ± 1.318
2.079LysAsn: 2.079 ± 0.539
0.693LysPro: 0.693 ± 0.522
2.079LysGln: 2.079 ± 1.456
4.158LysArg: 4.158 ± 1.748
5.544LysSer: 5.544 ± 1.869
4.158LysThr: 4.158 ± 1.676
2.079LysVal: 2.079 ± 1.131
0.693LysTrp: 0.693 ± 0.885
3.465LysTyr: 3.465 ± 1.908
0.0LysXaa: 0.0 ± 0.0
Leu
7.623LeuAla: 7.623 ± 2.857
1.386LeuCys: 1.386 ± 1.044
4.851LeuAsp: 4.851 ± 1.906
4.158LeuGlu: 4.158 ± 2.035
0.693LeuPhe: 0.693 ± 0.843
3.465LeuGly: 3.465 ± 1.797
0.0LeuHis: 0.0 ± 0.0
4.851LeuIle: 4.851 ± 1.745
4.851LeuLys: 4.851 ± 2.537
1.386LeuLeu: 1.386 ± 0.691
0.693LeuMet: 0.693 ± 0.687
4.158LeuAsn: 4.158 ± 0.678
5.544LeuPro: 5.544 ± 1.968
1.386LeuGln: 1.386 ± 0.953
4.158LeuArg: 4.158 ± 1.198
2.772LeuSer: 2.772 ± 1.418
3.465LeuThr: 3.465 ± 1.896
3.465LeuVal: 3.465 ± 1.359
0.693LeuTrp: 0.693 ± 0.748
0.693LeuTyr: 0.693 ± 0.748
0.0LeuXaa: 0.0 ± 0.0
Met
4.158MetAla: 4.158 ± 2.046
0.0MetCys: 0.0 ± 0.0
1.386MetAsp: 1.386 ± 0.953
4.851MetGlu: 4.851 ± 2.71
1.386MetPhe: 1.386 ± 1.044
2.079MetGly: 2.079 ± 0.986
1.386MetHis: 1.386 ± 0.64
1.386MetIle: 1.386 ± 1.164
1.386MetLys: 1.386 ± 0.953
0.693MetLeu: 0.693 ± 0.843
0.693MetMet: 0.693 ± 0.522
0.693MetAsn: 0.693 ± 0.522
2.772MetPro: 2.772 ± 2.088
0.693MetGln: 0.693 ± 0.726
1.386MetArg: 1.386 ± 1.201
1.386MetSer: 1.386 ± 0.64
2.772MetThr: 2.772 ± 1.279
0.693MetVal: 0.693 ± 0.843
0.0MetTrp: 0.0 ± 0.0
0.693MetTyr: 0.693 ± 0.522
0.0MetXaa: 0.0 ± 0.0
Asn
3.465AsnAla: 3.465 ± 1.725
0.0AsnCys: 0.0 ± 0.0
2.079AsnAsp: 2.079 ± 1.146
4.158AsnGlu: 4.158 ± 1.663
0.0AsnPhe: 0.0 ± 0.0
2.772AsnGly: 2.772 ± 1.17
0.0AsnHis: 0.0 ± 0.0
6.237AsnIle: 6.237 ± 2.814
6.237AsnLys: 6.237 ± 3.128
3.465AsnLeu: 3.465 ± 1.964
2.772AsnMet: 2.772 ± 1.417
1.386AsnAsn: 1.386 ± 1.055
3.465AsnPro: 3.465 ± 0.833
1.386AsnGln: 1.386 ± 1.044
4.158AsnArg: 4.158 ± 1.134
0.693AsnSer: 0.693 ± 0.726
4.158AsnThr: 4.158 ± 2.393
1.386AsnVal: 1.386 ± 1.044
0.0AsnTrp: 0.0 ± 0.0
0.693AsnTyr: 0.693 ± 0.748
0.0AsnXaa: 0.0 ± 0.0
Pro
1.386ProAla: 1.386 ± 0.691
0.693ProCys: 0.693 ± 0.748
1.386ProAsp: 1.386 ± 1.044
3.465ProGlu: 3.465 ± 1.404
3.465ProPhe: 3.465 ± 1.404
4.158ProGly: 4.158 ± 0.678
1.386ProHis: 1.386 ± 0.64
5.544ProIle: 5.544 ± 2.47
2.772ProLys: 2.772 ± 1.232
2.772ProLeu: 2.772 ± 0.973
0.693ProMet: 0.693 ± 0.522
2.079ProAsn: 2.079 ± 1.065
2.079ProPro: 2.079 ± 1.291
3.465ProGln: 3.465 ± 2.61
0.693ProArg: 0.693 ± 0.522
0.693ProSer: 0.693 ± 0.806
2.772ProThr: 2.772 ± 1.32
2.079ProVal: 2.079 ± 1.065
0.0ProTrp: 0.0 ± 0.0
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
4.158GlnAla: 4.158 ± 1.99
0.693GlnCys: 0.693 ± 0.748
2.079GlnAsp: 2.079 ± 0.933
4.158GlnGlu: 4.158 ± 1.792
0.693GlnPhe: 0.693 ± 0.522
4.851GlnGly: 4.851 ± 1.343
0.0GlnHis: 0.0 ± 0.0
1.386GlnIle: 1.386 ± 0.691
2.079GlnLys: 2.079 ± 1.158
1.386GlnLeu: 1.386 ± 0.64
0.693GlnMet: 0.693 ± 0.748
2.772GlnAsn: 2.772 ± 1.232
0.693GlnPro: 0.693 ± 0.522
2.079GlnGln: 2.079 ± 0.986
3.465GlnArg: 3.465 ± 0.988
3.465GlnSer: 3.465 ± 1.425
4.158GlnThr: 4.158 ± 1.919
1.386GlnVal: 1.386 ± 0.64
0.693GlnTrp: 0.693 ± 0.748
3.465GlnTyr: 3.465 ± 1.816
0.0GlnXaa: 0.0 ± 0.0
Arg
7.623ArgAla: 7.623 ± 4.086
0.693ArgCys: 0.693 ± 0.748
0.0ArgAsp: 0.0 ± 0.0
6.237ArgGlu: 6.237 ± 2.261
0.693ArgPhe: 0.693 ± 0.748
0.693ArgGly: 0.693 ± 0.522
0.693ArgHis: 0.693 ± 0.522
2.772ArgIle: 2.772 ± 2.011
4.158ArgLys: 4.158 ± 2.427
4.158ArgLeu: 4.158 ± 1.865
2.079ArgMet: 2.079 ± 1.566
1.386ArgAsn: 1.386 ± 0.806
4.158ArgPro: 4.158 ± 1.793
3.465ArgGln: 3.465 ± 0.934
4.158ArgArg: 4.158 ± 3.027
4.158ArgSer: 4.158 ± 2.316
2.079ArgThr: 2.079 ± 0.896
1.386ArgVal: 1.386 ± 1.497
0.0ArgTrp: 0.0 ± 0.0
2.079ArgTyr: 2.079 ± 1.291
0.0ArgXaa: 0.0 ± 0.0
Ser
6.237SerAla: 6.237 ± 2.963
0.693SerCys: 0.693 ± 0.806
1.386SerAsp: 1.386 ± 0.691
4.158SerGlu: 4.158 ± 2.072
3.465SerPhe: 3.465 ± 1.288
4.851SerGly: 4.851 ± 4.163
2.772SerHis: 2.772 ± 0.602
3.465SerIle: 3.465 ± 1.356
3.465SerLys: 3.465 ± 1.964
5.544SerLeu: 5.544 ± 1.738
1.386SerMet: 1.386 ± 0.691
2.772SerAsn: 2.772 ± 1.105
2.772SerPro: 2.772 ± 0.602
1.386SerGln: 1.386 ± 0.691
3.465SerArg: 3.465 ± 0.903
9.009SerSer: 9.009 ± 6.217
4.851SerThr: 4.851 ± 1.452
3.465SerVal: 3.465 ± 1.816
3.465SerTrp: 3.465 ± 2.12
4.158SerTyr: 4.158 ± 1.933
0.0SerXaa: 0.0 ± 0.0
Thr
8.316ThrAla: 8.316 ± 2.886
0.0ThrCys: 0.0 ± 0.0
6.237ThrAsp: 6.237 ± 0.893
4.851ThrGlu: 4.851 ± 1.543
0.693ThrPhe: 0.693 ± 0.726
4.851ThrGly: 4.851 ± 1.56
0.693ThrHis: 0.693 ± 0.748
3.465ThrIle: 3.465 ± 1.797
4.851ThrLys: 4.851 ± 2.374
5.544ThrLeu: 5.544 ± 2.346
0.693ThrMet: 0.693 ± 0.522
3.465ThrAsn: 3.465 ± 1.836
4.158ThrPro: 4.158 ± 1.725
2.772ThrGln: 2.772 ± 0.602
2.079ThrArg: 2.079 ± 1.566
4.851ThrSer: 4.851 ± 2.226
5.544ThrThr: 5.544 ± 2.641
2.079ThrVal: 2.079 ± 0.896
1.386ThrTrp: 1.386 ± 0.64
2.772ThrTyr: 2.772 ± 1.269
0.0ThrXaa: 0.0 ± 0.0
Val
2.772ValAla: 2.772 ± 0.602
0.0ValCys: 0.0 ± 0.0
2.079ValAsp: 2.079 ± 1.456
3.465ValGlu: 3.465 ± 1.24
0.0ValPhe: 0.0 ± 0.0
0.693ValGly: 0.693 ± 0.522
0.0ValHis: 0.0 ± 0.0
2.772ValIle: 2.772 ± 1.583
1.386ValLys: 1.386 ± 0.874
4.158ValLeu: 4.158 ± 1.565
0.693ValMet: 0.693 ± 1.009
2.772ValAsn: 2.772 ± 2.348
1.386ValPro: 1.386 ± 0.64
2.772ValGln: 2.772 ± 1.471
1.386ValArg: 1.386 ± 0.999
2.772ValSer: 2.772 ± 0.877
3.465ValThr: 3.465 ± 0.897
0.0ValVal: 0.0 ± 0.0
1.386ValTrp: 1.386 ± 0.64
2.772ValTyr: 2.772 ± 1.471
0.0ValXaa: 0.0 ± 0.0
Trp
1.386TrpAla: 1.386 ± 1.497
0.0TrpCys: 0.0 ± 0.0
0.693TrpAsp: 0.693 ± 0.522
2.079TrpGlu: 2.079 ± 1.423
1.386TrpPhe: 1.386 ± 0.64
1.386TrpGly: 1.386 ± 1.453
0.693TrpHis: 0.693 ± 0.522
0.0TrpIle: 0.0 ± 0.0
0.693TrpLys: 0.693 ± 0.522
1.386TrpLeu: 1.386 ± 0.85
0.693TrpMet: 0.693 ± 0.522
1.386TrpAsn: 1.386 ± 0.874
0.0TrpPro: 0.0 ± 0.0
1.386TrpGln: 1.386 ± 0.691
0.693TrpArg: 0.693 ± 0.748
0.693TrpSer: 0.693 ± 0.522
2.772TrpThr: 2.772 ± 0.973
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.386TrpTyr: 1.386 ± 0.64
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.079TyrAla: 2.079 ± 1.566
0.693TyrCys: 0.693 ± 0.748
1.386TyrAsp: 1.386 ± 0.954
2.772TyrGlu: 2.772 ± 0.973
2.772TyrPhe: 2.772 ± 1.672
3.465TyrGly: 3.465 ± 1.005
1.386TyrHis: 1.386 ± 1.497
6.93TyrIle: 6.93 ± 2.24
2.079TyrLys: 2.079 ± 1.765
2.772TyrLeu: 2.772 ± 0.869
1.386TyrMet: 1.386 ± 0.838
3.465TyrAsn: 3.465 ± 1.328
2.079TyrPro: 2.079 ± 0.836
2.772TyrGln: 2.772 ± 1.107
1.386TyrArg: 1.386 ± 0.806
2.772TyrSer: 2.772 ± 1.471
5.544TyrThr: 5.544 ± 1.77
1.386TyrVal: 1.386 ± 0.999
0.693TyrTrp: 0.693 ± 0.522
2.772TyrTyr: 2.772 ± 1.269
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1444 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski