Georhizobium profundi

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Georhizobium

Average proteome isoelectric point is 6.2

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S9B9X6|A0A3S9B9X6_9RHIZ Urea ABC transporter permease subunit UrtB OS=Georhizobium profundi OX=2341112 GN=urtB PE=4 SV=1
MM1 pKa = 7.54APAAMAQDD9 pKa = 3.57AAGMPEE15 pKa = 4.03EE16 pKa = 4.46TGDD19 pKa = 5.08LITATATLEE28 pKa = 4.11GDD30 pKa = 4.05GIEE33 pKa = 4.37GTVTLTEE40 pKa = 4.31TPTGIVIIEE49 pKa = 4.07IEE51 pKa = 4.14ASGLEE56 pKa = 4.15PGPHH60 pKa = 5.77GVHH63 pKa = 5.8LHH65 pKa = 5.16EE66 pKa = 5.54TGTCDD71 pKa = 4.38AEE73 pKa = 4.81GGHH76 pKa = 6.06EE77 pKa = 3.87AAGGHH82 pKa = 4.84VSGDD86 pKa = 3.71GEE88 pKa = 4.44HH89 pKa = 7.13GVLNPNGPHH98 pKa = 7.01PGDD101 pKa = 3.69LPNVHH106 pKa = 5.54VQEE109 pKa = 5.18DD110 pKa = 5.18GIAHH114 pKa = 6.83AEE116 pKa = 4.09FFVSDD121 pKa = 3.37IALSGDD127 pKa = 3.44AGTVILDD134 pKa = 3.74DD135 pKa = 5.37DD136 pKa = 4.21GAAFIIHH143 pKa = 7.1AGADD147 pKa = 3.55DD148 pKa = 4.44YY149 pKa = 10.53MTDD152 pKa = 3.61PAGDD156 pKa = 3.44SGDD159 pKa = 4.42RR160 pKa = 11.84IACGVIEE167 pKa = 4.41AANN170 pKa = 3.31

Molecular weight: 16.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S9AZD4|A0A3S9AZD4_9RHIZ LysR family transcriptional regulator OS=Georhizobium profundi OX=2341112 GN=D5400_01175 PE=3 SV=1
MM1 pKa = 7.51TKK3 pKa = 9.11RR4 pKa = 11.84TFQPSKK10 pKa = 9.84LVRR13 pKa = 11.84KK14 pKa = 9.15RR15 pKa = 11.84RR16 pKa = 11.84HH17 pKa = 4.42GFRR20 pKa = 11.84ARR22 pKa = 11.84MATAGGRR29 pKa = 11.84KK30 pKa = 8.88VLAARR35 pKa = 11.84RR36 pKa = 11.84ARR38 pKa = 11.84GRR40 pKa = 11.84KK41 pKa = 9.03RR42 pKa = 11.84LSAA45 pKa = 4.03

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4118

0

4118

1291389

28

2867

313.6

34.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.399 ± 0.048

0.78 ± 0.012

6.06 ± 0.037

6.023 ± 0.034

3.854 ± 0.021

8.474 ± 0.042

2.029 ± 0.02

5.609 ± 0.028

3.035 ± 0.03

9.821 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.621 ± 0.019

2.607 ± 0.025

4.895 ± 0.026

3.104 ± 0.022

7.066 ± 0.049

5.563 ± 0.027

5.34 ± 0.028

7.334 ± 0.034

1.229 ± 0.014

2.158 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski