Cohnella sp. CIP 111063

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Cohnella; unclassified Cohnella

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6817 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A231RMG5|A0A231RMG5_9BACL TGc domain-containing protein OS=Cohnella sp. CIP 111063 OX=1955714 GN=B1A99_08210 PE=4 SV=1
MM1 pKa = 6.91VNKK4 pKa = 9.6MLISLVAVLFGFMSFGSIQANTYY27 pKa = 10.15EE28 pKa = 4.3YY29 pKa = 10.69TPVPKK34 pKa = 10.61DD35 pKa = 3.19EE36 pKa = 4.25NTRR39 pKa = 11.84VAYY42 pKa = 10.4VGAIYY47 pKa = 10.47QEE49 pKa = 4.34DD50 pKa = 3.44EE51 pKa = 4.6GYY53 pKa = 10.92YY54 pKa = 10.73ADD56 pKa = 4.44ADD58 pKa = 4.18FIEE61 pKa = 4.95WYY63 pKa = 10.04EE64 pKa = 4.29GEE66 pKa = 3.95AANAIFRR73 pKa = 11.84EE74 pKa = 4.22RR75 pKa = 11.84EE76 pKa = 3.67ADD78 pKa = 3.41SGMDD82 pKa = 3.62EE83 pKa = 5.31APDD86 pKa = 3.75GYY88 pKa = 11.26YY89 pKa = 9.85IVNDD93 pKa = 3.51DD94 pKa = 3.84TTVEE98 pKa = 4.08RR99 pKa = 11.84LKK101 pKa = 10.65LAPDD105 pKa = 3.6AQVFMQIYY113 pKa = 10.46DD114 pKa = 3.54RR115 pKa = 11.84TGDD118 pKa = 3.27IAEE121 pKa = 5.3ADD123 pKa = 4.25TVWNEE128 pKa = 4.02QISLDD133 pKa = 4.08KK134 pKa = 10.85FLALLADD141 pKa = 4.46DD142 pKa = 4.35SAMNLRR148 pKa = 11.84DD149 pKa = 3.8YY150 pKa = 10.29PYY152 pKa = 10.56HH153 pKa = 7.23LSIVNGVVVKK163 pKa = 9.49ITQQFLPP170 pKa = 4.19

Molecular weight: 19.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A231RBY0|A0A231RBY0_9BACL Cyclic-di-AMP phosphodiesterase OS=Cohnella sp. CIP 111063 OX=1955714 GN=B1A99_20110 PE=3 SV=1
MM1 pKa = 7.61GPTFKK6 pKa = 10.87PNVSKK11 pKa = 10.8RR12 pKa = 11.84KK13 pKa = 8.57KK14 pKa = 8.17VHH16 pKa = 5.5GFRR19 pKa = 11.84SRR21 pKa = 11.84MSTKK25 pKa = 10.35NGRR28 pKa = 11.84KK29 pKa = 8.13VLKK32 pKa = 10.34ARR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.22GRR39 pKa = 11.84KK40 pKa = 8.88VLTAA44 pKa = 4.27

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6817

0

6817

2409860

26

4008

353.5

39.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.346 ± 0.039

0.731 ± 0.01

5.271 ± 0.02

6.868 ± 0.034

4.066 ± 0.022

7.945 ± 0.032

1.872 ± 0.013

5.936 ± 0.025

4.633 ± 0.025

10.196 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.576 ± 0.013

3.468 ± 0.023

4.322 ± 0.018

3.38 ± 0.016

5.988 ± 0.033

6.283 ± 0.026

5.105 ± 0.028

7.104 ± 0.022

1.42 ± 0.014

3.492 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski