Capybara microvirus Cap1_SP_124

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 7.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W7V9|A0A4P8W7V9_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_124 OX=2585379 PE=4 SV=1
MM1 pKa = 7.35SRR3 pKa = 11.84NEE5 pKa = 3.64LAYY8 pKa = 10.03EE9 pKa = 4.04VLDD12 pKa = 4.63TIDD15 pKa = 3.87TPRR18 pKa = 11.84STWQRR23 pKa = 11.84NFTHH27 pKa = 5.98KK28 pKa = 9.74TSFNAGKK35 pKa = 10.27LIPFYY40 pKa = 10.25IDD42 pKa = 2.91TDD44 pKa = 4.38IIPGTTIKK52 pKa = 10.78NKK54 pKa = 7.91TSIVIRR60 pKa = 11.84MSTPIAPVMDD70 pKa = 4.2NLYY73 pKa = 10.83LDD75 pKa = 4.06TYY77 pKa = 10.16YY78 pKa = 10.85FKK80 pKa = 10.92CSKK83 pKa = 9.39FWYY86 pKa = 8.05WEE88 pKa = 3.68HH89 pKa = 6.45FRR91 pKa = 11.84AQMGEE96 pKa = 4.08NNQSAWTQTIEE107 pKa = 4.47YY108 pKa = 9.45IEE110 pKa = 4.36PQIKK114 pKa = 8.49MLSMEE119 pKa = 4.1YY120 pKa = 10.41GANDD124 pKa = 3.34VACYY128 pKa = 9.56MGMPINVANLEE139 pKa = 4.18WSKK142 pKa = 11.35LPVQAYY148 pKa = 9.67IDD150 pKa = 3.21IWNNWFRR157 pKa = 11.84DD158 pKa = 3.68EE159 pKa = 4.63NLQAPITLDD168 pKa = 3.21KK169 pKa = 11.01TDD171 pKa = 4.44ADD173 pKa = 4.01LTADD177 pKa = 3.42ATINTGFGLLPVCKK191 pKa = 9.86FHH193 pKa = 8.39DD194 pKa = 4.49YY195 pKa = 8.25FTSLLPQPQKK205 pKa = 11.38GEE207 pKa = 4.09AVTMPLGLTAPVTGTVIGNGKK228 pKa = 7.37TLGLWNGTTTAGIRR242 pKa = 11.84QGIGVSGDD250 pKa = 3.22NYY252 pKa = 11.04SNGIGIASYY261 pKa = 10.98NSSNLPYY268 pKa = 8.63NTSGVSSLNNTAGLGVTTNPDD289 pKa = 2.93KK290 pKa = 11.38SGLKK294 pKa = 9.37IASNAVADD302 pKa = 4.19LTSATAATFNALRR315 pKa = 11.84LAGATQRR322 pKa = 11.84ILEE325 pKa = 4.15KK326 pKa = 10.39DD327 pKa = 3.0ARR329 pKa = 11.84FGTRR333 pKa = 11.84YY334 pKa = 10.0PEE336 pKa = 4.04FLKK339 pKa = 10.96GQYY342 pKa = 10.34GVTAADD348 pKa = 3.67EE349 pKa = 4.4CLLIPEE355 pKa = 4.23YY356 pKa = 10.85LGGKK360 pKa = 9.42RR361 pKa = 11.84IPINIEE367 pKa = 3.84QVCQTSSTDD376 pKa = 3.15STSPLGEE383 pKa = 4.06TGAMSVTADD392 pKa = 3.13INEE395 pKa = 4.73DD396 pKa = 3.43FTKK399 pKa = 10.84SFTKK403 pKa = 10.11HH404 pKa = 6.27DD405 pKa = 3.95FLIGVCCVRR414 pKa = 11.84AEE416 pKa = 3.94HH417 pKa = 6.96TYY419 pKa = 9.94QQGIPLQFKK428 pKa = 9.92RR429 pKa = 11.84KK430 pKa = 9.03RR431 pKa = 11.84RR432 pKa = 11.84LDD434 pKa = 3.49TYY436 pKa = 10.51HH437 pKa = 7.55PSLAHH442 pKa = 6.92IGNQPVYY449 pKa = 10.03NFEE452 pKa = 4.34IFAQGNSTDD461 pKa = 4.19DD462 pKa = 3.11EE463 pKa = 4.97VMGYY467 pKa = 9.92KK468 pKa = 9.81EE469 pKa = 3.85AWQEE473 pKa = 3.68YY474 pKa = 9.17LYY476 pKa = 10.9KK477 pKa = 10.26PNRR480 pKa = 11.84ISGQMLSTYY489 pKa = 7.29TQSLDD494 pKa = 2.93VWHH497 pKa = 6.74YY498 pKa = 10.96GDD500 pKa = 5.8DD501 pKa = 4.11YY502 pKa = 12.05VNLPVLSSEE511 pKa = 4.47WIVEE515 pKa = 3.72PTEE518 pKa = 4.26YY519 pKa = 9.51IDD521 pKa = 3.24RR522 pKa = 11.84TLAVSSSVSNQFWADD537 pKa = 2.99IYY539 pKa = 10.83IEE541 pKa = 4.41QIVSAPIPINRR552 pKa = 11.84VPGLIDD558 pKa = 3.56HH559 pKa = 6.51YY560 pKa = 11.72

Molecular weight: 62.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVP3|A0A4V1FVP3_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_124 OX=2585379 PE=4 SV=1
MM1 pKa = 7.33TRR3 pKa = 11.84LSHH6 pKa = 5.15NQYY9 pKa = 9.69YY10 pKa = 10.19GEE12 pKa = 4.11RR13 pKa = 11.84KK14 pKa = 9.76NVFEE18 pKa = 4.67MLNIVYY24 pKa = 9.35RR25 pKa = 11.84KK26 pKa = 9.01PSQYY30 pKa = 10.14HH31 pKa = 5.24HH32 pKa = 7.3AGHH35 pKa = 7.07KK36 pKa = 9.21EE37 pKa = 3.87PQRR40 pKa = 11.84LSHH43 pKa = 6.24RR44 pKa = 11.84LKK46 pKa = 8.6WYY48 pKa = 9.21YY49 pKa = 11.38YY50 pKa = 10.06KK51 pKa = 10.21FTPEE55 pKa = 4.02KK56 pKa = 10.18IAIEE60 pKa = 3.91NEE62 pKa = 3.47INRR65 pKa = 11.84NQRR68 pKa = 11.84PNIQNEE74 pKa = 4.16KK75 pKa = 10.4

Molecular weight: 9.36 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1502

75

560

250.3

28.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.325 ± 1.08

1.265 ± 0.364

4.594 ± 0.821

7.39 ± 1.182

3.995 ± 0.435

6.591 ± 1.238

1.598 ± 0.448

6.991 ± 0.746

9.521 ± 2.208

7.19 ± 0.621

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.597 ± 0.385

7.39 ± 0.512

3.662 ± 0.743

3.995 ± 0.245

4.194 ± 0.565

5.992 ± 1.357

7.523 ± 0.733

3.129 ± 0.836

1.265 ± 0.376

4.794 ± 0.442
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski