Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_124

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.331AlaAla: 3.331 ± 2.169
1.999AlaCys: 1.999 ± 0.671
5.996AlaAsp: 5.996 ± 2.105
5.33AlaGlu: 5.33 ± 2.386
1.999AlaPhe: 1.999 ± 1.046
5.33AlaGly: 5.33 ± 1.36
1.332AlaHis: 1.332 ± 0.62
3.331AlaIle: 3.331 ± 1.515
3.997AlaLys: 3.997 ± 2.039
1.999AlaLeu: 1.999 ± 1.198
3.331AlaMet: 3.331 ± 1.541
4.664AlaAsn: 4.664 ± 1.77
2.665AlaPro: 2.665 ± 1.758
1.999AlaGln: 1.999 ± 0.931
1.999AlaArg: 1.999 ± 0.466
3.331AlaSer: 3.331 ± 1.457
3.997AlaThr: 3.997 ± 1.295
2.665AlaVal: 2.665 ± 1.205
2.665AlaTrp: 2.665 ± 0.943
1.332AlaTyr: 1.332 ± 0.879
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
1.332CysCys: 1.332 ± 0.471
0.0CysAsp: 0.0 ± 0.0
1.332CysGlu: 1.332 ± 0.86
0.666CysPhe: 0.666 ± 0.519
1.999CysGly: 1.999 ± 1.21
0.0CysHis: 0.0 ± 0.0
0.666CysIle: 0.666 ± 0.765
0.666CysLys: 0.666 ± 0.44
1.999CysLeu: 1.999 ± 0.889
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.666CysGln: 0.666 ± 0.44
0.666CysArg: 0.666 ± 0.519
0.666CysSer: 0.666 ± 0.44
0.0CysThr: 0.0 ± 0.0
0.666CysVal: 0.666 ± 0.44
0.0CysTrp: 0.0 ± 0.0
1.332CysTyr: 1.332 ± 0.471
0.0CysXaa: 0.0 ± 0.0
Asp
1.999AspAla: 1.999 ± 1.319
0.0AspCys: 0.0 ± 0.0
1.999AspAsp: 1.999 ± 0.749
5.33AspGlu: 5.33 ± 1.606
3.331AspPhe: 3.331 ± 1.433
0.0AspGly: 0.0 ± 0.0
1.332AspHis: 1.332 ± 0.471
3.997AspIle: 3.997 ± 1.411
4.664AspLys: 4.664 ± 1.238
5.33AspLeu: 5.33 ± 1.547
0.666AspMet: 0.666 ± 0.765
3.331AspAsn: 3.331 ± 1.346
0.666AspPro: 0.666 ± 0.519
0.0AspGln: 0.0 ± 0.0
1.332AspArg: 1.332 ± 0.471
1.999AspSer: 1.999 ± 0.983
5.996AspThr: 5.996 ± 1.911
1.332AspVal: 1.332 ± 0.879
0.0AspTrp: 0.0 ± 0.0
2.665AspTyr: 2.665 ± 0.935
0.0AspXaa: 0.0 ± 0.0
Glu
2.665GluAla: 2.665 ± 0.739
0.666GluCys: 0.666 ± 0.44
3.997GluAsp: 3.997 ± 2.274
3.331GluGlu: 3.331 ± 1.749
2.665GluPhe: 2.665 ± 0.692
0.666GluGly: 0.666 ± 0.656
1.332GluHis: 1.332 ± 0.879
3.997GluIle: 3.997 ± 2.346
10.66GluLys: 10.66 ± 4.545
3.997GluLeu: 3.997 ± 1.356
1.332GluMet: 1.332 ± 0.866
7.995GluAsn: 7.995 ± 2.274
2.665GluPro: 2.665 ± 0.871
4.664GluGln: 4.664 ± 1.679
3.331GluArg: 3.331 ± 1.402
3.331GluSer: 3.331 ± 1.943
4.664GluThr: 4.664 ± 1.707
3.331GluVal: 3.331 ± 1.457
1.332GluTrp: 1.332 ± 0.879
7.328GluTyr: 7.328 ± 0.786
0.0GluXaa: 0.0 ± 0.0
Phe
1.332PheAla: 1.332 ± 0.62
0.666PheCys: 0.666 ± 0.519
1.999PheAsp: 1.999 ± 1.554
3.331PheGlu: 3.331 ± 1.435
1.332PhePhe: 1.332 ± 1.038
2.665PheGly: 2.665 ± 0.739
0.666PheHis: 0.666 ± 0.44
3.997PheIle: 3.997 ± 2.488
4.664PheLys: 4.664 ± 1.11
1.332PheLeu: 1.332 ± 0.879
0.666PheMet: 0.666 ± 0.761
2.665PheAsn: 2.665 ± 1.455
0.0PhePro: 0.0 ± 0.0
0.0PheGln: 0.0 ± 0.0
2.665PheArg: 2.665 ± 0.775
2.665PheSer: 2.665 ± 1.885
4.664PheThr: 4.664 ± 1.917
1.332PheVal: 1.332 ± 0.869
1.332PheTrp: 1.332 ± 0.879
1.999PheTyr: 1.999 ± 0.696
0.0PheXaa: 0.0 ± 0.0
Gly
7.995GlyAla: 7.995 ± 3.562
1.332GlyCys: 1.332 ± 0.869
1.999GlyAsp: 1.999 ± 0.749
4.664GlyGlu: 4.664 ± 1.014
2.665GlyPhe: 2.665 ± 0.832
3.997GlyGly: 3.997 ± 3.122
1.332GlyHis: 1.332 ± 1.125
3.997GlyIle: 3.997 ± 1.974
7.995GlyLys: 7.995 ± 1.73
7.995GlyLeu: 7.995 ± 1.69
0.666GlyMet: 0.666 ± 0.44
3.331GlyAsn: 3.331 ± 1.423
0.666GlyPro: 0.666 ± 0.519
1.999GlyGln: 1.999 ± 0.749
1.332GlyArg: 1.332 ± 1.038
1.332GlySer: 1.332 ± 1.311
5.996GlyThr: 5.996 ± 1.074
3.997GlyVal: 3.997 ± 2.073
0.666GlyTrp: 0.666 ± 0.656
1.999GlyTyr: 1.999 ± 0.466
0.0GlyXaa: 0.0 ± 0.0
His
2.665HisAla: 2.665 ± 1.397
0.0HisCys: 0.0 ± 0.0
1.332HisAsp: 1.332 ± 0.879
1.332HisGlu: 1.332 ± 1.038
0.666HisPhe: 0.666 ± 0.44
0.666HisGly: 0.666 ± 0.761
0.666HisHis: 0.666 ± 0.754
0.666HisIle: 0.666 ± 0.44
1.332HisLys: 1.332 ± 0.788
0.0HisLeu: 0.0 ± 0.0
0.0HisMet: 0.0 ± 0.0
0.666HisAsn: 0.666 ± 0.754
1.332HisPro: 1.332 ± 0.728
1.332HisGln: 1.332 ± 1.121
0.666HisArg: 0.666 ± 0.754
0.0HisSer: 0.0 ± 0.0
0.666HisThr: 0.666 ± 0.44
0.0HisVal: 0.0 ± 0.0
0.0HisTrp: 0.0 ± 0.0
1.999HisTyr: 1.999 ± 0.749
0.0HisXaa: 0.0 ± 0.0
Ile
3.331IleAla: 3.331 ± 1.346
0.0IleCys: 0.0 ± 0.0
5.996IleAsp: 5.996 ± 1.792
5.996IleGlu: 5.996 ± 2.154
1.999IlePhe: 1.999 ± 0.696
4.664IleGly: 4.664 ± 1.714
0.0IleHis: 0.0 ± 0.0
2.665IleIle: 2.665 ± 0.768
6.662IleLys: 6.662 ± 1.666
3.331IleLeu: 3.331 ± 1.118
3.331IleMet: 3.331 ± 1.6
6.662IleAsn: 6.662 ± 2.308
5.33IlePro: 5.33 ± 2.269
4.664IleGln: 4.664 ± 2.097
2.665IleArg: 2.665 ± 0.775
1.332IleSer: 1.332 ± 0.62
5.33IleThr: 5.33 ± 1.783
3.331IleVal: 3.331 ± 1.159
0.666IleTrp: 0.666 ± 0.44
1.999IleTyr: 1.999 ± 0.696
0.0IleXaa: 0.0 ± 0.0
Lys
5.33LysAla: 5.33 ± 3.113
1.999LysCys: 1.999 ± 0.696
1.999LysAsp: 1.999 ± 0.872
5.996LysGlu: 5.996 ± 2.05
5.996LysPhe: 5.996 ± 1.508
3.997LysGly: 3.997 ± 1.238
1.332LysHis: 1.332 ± 0.471
10.66LysIle: 10.66 ± 4.309
8.661LysLys: 8.661 ± 3.943
7.995LysLeu: 7.995 ± 2.962
2.665LysMet: 2.665 ± 1.063
8.661LysAsn: 8.661 ± 2.889
3.997LysPro: 3.997 ± 1.636
2.665LysGln: 2.665 ± 1.443
3.997LysArg: 3.997 ± 1.003
4.664LysSer: 4.664 ± 1.362
10.66LysThr: 10.66 ± 2.605
0.0LysVal: 0.0 ± 0.0
0.666LysTrp: 0.666 ± 0.754
2.665LysTyr: 2.665 ± 1.225
0.0LysXaa: 0.0 ± 0.0
Leu
3.331LeuAla: 3.331 ± 1.549
0.666LeuCys: 0.666 ± 0.519
4.664LeuAsp: 4.664 ± 1.871
3.997LeuGlu: 3.997 ± 1.393
0.666LeuPhe: 0.666 ± 0.656
6.662LeuGly: 6.662 ± 1.257
0.666LeuHis: 0.666 ± 0.761
4.664LeuIle: 4.664 ± 1.152
8.661LeuLys: 8.661 ± 2.806
3.331LeuLeu: 3.331 ± 1.245
0.666LeuMet: 0.666 ± 0.765
5.996LeuAsn: 5.996 ± 1.84
5.33LeuPro: 5.33 ± 1.518
2.665LeuGln: 2.665 ± 0.563
3.331LeuArg: 3.331 ± 1.4
8.661LeuSer: 8.661 ± 2.074
3.997LeuThr: 3.997 ± 1.414
0.0LeuVal: 0.0 ± 0.0
0.666LeuTrp: 0.666 ± 0.44
3.331LeuTyr: 3.331 ± 1.412
0.0LeuXaa: 0.0 ± 0.0
Met
0.666MetAla: 0.666 ± 0.761
0.0MetCys: 0.0 ± 0.0
1.332MetAsp: 1.332 ± 0.62
1.332MetGlu: 1.332 ± 0.471
0.666MetPhe: 0.666 ± 0.519
4.664MetGly: 4.664 ± 2.012
0.0MetHis: 0.0 ± 0.0
1.332MetIle: 1.332 ± 1.531
1.332MetLys: 1.332 ± 1.121
3.997MetLeu: 3.997 ± 0.974
0.666MetMet: 0.666 ± 0.519
0.666MetAsn: 0.666 ± 0.761
1.332MetPro: 1.332 ± 0.879
1.332MetGln: 1.332 ± 0.869
1.332MetArg: 1.332 ± 1.522
2.665MetSer: 2.665 ± 1.134
1.999MetThr: 1.999 ± 1.157
0.666MetVal: 0.666 ± 0.519
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
4.664AsnAla: 4.664 ± 0.997
0.666AsnCys: 0.666 ± 0.519
2.665AsnAsp: 2.665 ± 0.976
4.664AsnGlu: 4.664 ± 1.644
3.331AsnPhe: 3.331 ± 1.325
5.33AsnGly: 5.33 ± 2.407
0.666AsnHis: 0.666 ± 0.519
3.997AsnIle: 3.997 ± 2.105
6.662AsnLys: 6.662 ± 2.836
5.33AsnLeu: 5.33 ± 1.628
0.0AsnMet: 0.0 ± 0.0
6.662AsnAsn: 6.662 ± 1.769
3.331AsnPro: 3.331 ± 1.225
3.997AsnGln: 3.997 ± 1.593
5.996AsnArg: 5.996 ± 1.689
5.33AsnSer: 5.33 ± 1.663
3.331AsnThr: 3.331 ± 1.245
2.665AsnVal: 2.665 ± 1.594
0.666AsnTrp: 0.666 ± 0.44
3.997AsnTyr: 3.997 ± 1.856
0.0AsnXaa: 0.0 ± 0.0
Pro
0.666ProAla: 0.666 ± 0.519
0.666ProCys: 0.666 ± 0.519
0.666ProAsp: 0.666 ± 0.44
3.331ProGlu: 3.331 ± 1.626
1.999ProPhe: 1.999 ± 0.983
1.332ProGly: 1.332 ± 0.879
0.666ProHis: 0.666 ± 0.519
6.662ProIle: 6.662 ± 1.672
1.332ProLys: 1.332 ± 0.86
2.665ProLeu: 2.665 ± 1.134
0.0ProMet: 0.0 ± 0.0
1.999ProAsn: 1.999 ± 0.749
0.0ProPro: 0.0 ± 0.0
3.331ProGln: 3.331 ± 1.159
2.665ProArg: 2.665 ± 0.954
1.999ProSer: 1.999 ± 0.749
1.999ProThr: 1.999 ± 0.696
3.997ProVal: 3.997 ± 2.637
0.0ProTrp: 0.0 ± 0.0
0.666ProTyr: 0.666 ± 0.44
0.0ProXaa: 0.0 ± 0.0
Gln
2.665GlnAla: 2.665 ± 1.239
0.0GlnCys: 0.0 ± 0.0
0.666GlnAsp: 0.666 ± 0.765
3.331GlnGlu: 3.331 ± 1.4
1.999GlnPhe: 1.999 ± 0.749
2.665GlnGly: 2.665 ± 1.205
0.0GlnHis: 0.0 ± 0.0
3.331GlnIle: 3.331 ± 1.325
5.33GlnLys: 5.33 ± 1.783
0.666GlnLeu: 0.666 ± 0.519
1.999GlnMet: 1.999 ± 0.931
2.665GlnAsn: 2.665 ± 1.252
1.332GlnPro: 1.332 ± 0.879
1.999GlnGln: 1.999 ± 0.863
3.997GlnArg: 3.997 ± 2.074
1.999GlnSer: 1.999 ± 0.955
1.999GlnThr: 1.999 ± 0.749
0.666GlnVal: 0.666 ± 0.44
0.666GlnTrp: 0.666 ± 0.656
1.999GlnTyr: 1.999 ± 1.478
0.0GlnXaa: 0.0 ± 0.0
Arg
3.997ArgAla: 3.997 ± 0.756
0.0ArgCys: 0.0 ± 0.0
1.332ArgAsp: 1.332 ± 0.728
3.997ArgGlu: 3.997 ± 2.608
1.332ArgPhe: 1.332 ± 0.471
2.665ArgGly: 2.665 ± 1.443
0.0ArgHis: 0.0 ± 0.0
2.665ArgIle: 2.665 ± 1.134
5.33ArgLys: 5.33 ± 2.312
5.33ArgLeu: 5.33 ± 2.287
1.332ArgMet: 1.332 ± 0.728
3.331ArgAsn: 3.331 ± 0.929
1.332ArgPro: 1.332 ± 0.866
0.666ArgGln: 0.666 ± 0.44
0.666ArgArg: 0.666 ± 0.44
1.332ArgSer: 1.332 ± 0.62
2.665ArgThr: 2.665 ± 0.954
1.332ArgVal: 1.332 ± 0.471
0.0ArgTrp: 0.0 ± 0.0
2.665ArgTyr: 2.665 ± 0.768
0.0ArgXaa: 0.0 ± 0.0
Ser
5.33SerAla: 5.33 ± 2.983
0.0SerCys: 0.0 ± 0.0
2.665SerAsp: 2.665 ± 1.314
2.665SerGlu: 2.665 ± 1.036
2.665SerPhe: 2.665 ± 0.929
4.664SerGly: 4.664 ± 1.347
1.332SerHis: 1.332 ± 1.507
1.999SerIle: 1.999 ± 1.198
5.996SerLys: 5.996 ± 1.145
3.997SerLeu: 3.997 ± 1.555
2.665SerMet: 2.665 ± 1.241
3.331SerAsn: 3.331 ± 1.602
1.332SerPro: 1.332 ± 0.728
1.332SerGln: 1.332 ± 0.866
1.999SerArg: 1.999 ± 0.466
6.662SerSer: 6.662 ± 2.182
6.662SerThr: 6.662 ± 1.936
2.665SerVal: 2.665 ± 0.563
0.0SerTrp: 0.0 ± 0.0
1.999SerTyr: 1.999 ± 0.466
0.0SerXaa: 0.0 ± 0.0
Thr
7.995ThrAla: 7.995 ± 1.952
0.0ThrCys: 0.0 ± 0.0
3.997ThrAsp: 3.997 ± 1.555
5.33ThrGlu: 5.33 ± 1.805
1.999ThrPhe: 1.999 ± 0.889
7.328ThrGly: 7.328 ± 2.043
1.332ThrHis: 1.332 ± 0.728
5.33ThrIle: 5.33 ± 0.998
4.664ThrLys: 4.664 ± 1.11
6.662ThrLeu: 6.662 ± 1.068
0.666ThrMet: 0.666 ± 0.44
5.33ThrAsn: 5.33 ± 2.232
2.665ThrPro: 2.665 ± 1.128
1.999ThrGln: 1.999 ± 1.319
1.999ThrArg: 1.999 ± 0.749
6.662ThrSer: 6.662 ± 2.619
4.664ThrThr: 4.664 ± 1.609
1.332ThrVal: 1.332 ± 0.471
1.332ThrTrp: 1.332 ± 0.471
3.997ThrTyr: 3.997 ± 1.295
0.0ThrXaa: 0.0 ± 0.0
Val
2.665ValAla: 2.665 ± 1.286
2.665ValCys: 2.665 ± 1.134
0.0ValAsp: 0.0 ± 0.0
2.665ValGlu: 2.665 ± 1.339
0.666ValPhe: 0.666 ± 0.754
0.666ValGly: 0.666 ± 0.519
0.0ValHis: 0.0 ± 0.0
1.332ValIle: 1.332 ± 0.879
1.999ValLys: 1.999 ± 1.2
1.332ValLeu: 1.332 ± 0.879
1.999ValMet: 1.999 ± 0.749
1.999ValAsn: 1.999 ± 0.863
1.332ValPro: 1.332 ± 0.471
1.332ValGln: 1.332 ± 0.471
0.666ValArg: 0.666 ± 0.44
3.997ValSer: 3.997 ± 2.016
3.331ValThr: 3.331 ± 2.198
0.0ValVal: 0.0 ± 0.0
0.666ValTrp: 0.666 ± 0.44
1.999ValTyr: 1.999 ± 0.997
0.0ValXaa: 0.0 ± 0.0
Trp
1.332TrpAla: 1.332 ± 0.471
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
1.999TrpGlu: 1.999 ± 1.198
0.666TrpPhe: 0.666 ± 0.44
0.666TrpGly: 0.666 ± 0.519
0.666TrpHis: 0.666 ± 0.44
0.666TrpIle: 0.666 ± 0.44
0.666TrpLys: 0.666 ± 0.519
0.666TrpLeu: 0.666 ± 0.519
0.0TrpMet: 0.0 ± 0.0
1.332TrpAsn: 1.332 ± 0.879
0.0TrpPro: 0.0 ± 0.0
1.332TrpGln: 1.332 ± 0.879
0.0TrpArg: 0.0 ± 0.0
0.666TrpSer: 0.666 ± 0.44
0.666TrpThr: 0.666 ± 0.44
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.332TrpTyr: 1.332 ± 0.788
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.332TyrAla: 1.332 ± 1.121
0.0TyrCys: 0.0 ± 0.0
2.665TyrAsp: 2.665 ± 1.61
3.997TyrGlu: 3.997 ± 1.356
2.665TyrPhe: 2.665 ± 0.943
5.33TyrGly: 5.33 ± 0.67
2.665TyrHis: 2.665 ± 0.953
3.997TyrIle: 3.997 ± 2.073
3.997TyrLys: 3.997 ± 1.425
3.997TyrLeu: 3.997 ± 1.414
2.665TyrMet: 2.665 ± 1.165
2.665TyrAsn: 2.665 ± 1.134
1.332TyrPro: 1.332 ± 0.745
1.999TyrGln: 1.999 ± 1.198
0.666TyrArg: 0.666 ± 0.754
0.666TyrSer: 0.666 ± 0.44
1.999TyrThr: 1.999 ± 0.889
1.332TyrVal: 1.332 ± 0.471
1.332TyrTrp: 1.332 ± 0.471
2.665TyrTyr: 2.665 ± 2.21
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1502 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski