Chryseobacterium taklimakanense

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group;

Average proteome isoelectric point is 6.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2590 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A239XU56|A0A239XU56_9FLAO Zinc-transporting ATPase OS=Chryseobacterium taklimakanense OX=536441 GN=ziaA_3 PE=3 SV=1
MM1 pKa = 7.77ANWCNNWVVFEE12 pKa = 4.32GTAEE16 pKa = 4.55AIEE19 pKa = 4.84QITQLFKK26 pKa = 11.58SMAKK30 pKa = 9.7QEE32 pKa = 4.08QKK34 pKa = 10.94DD35 pKa = 3.68DD36 pKa = 4.0CGQLPNFVQDD46 pKa = 2.9THH48 pKa = 8.19GDD50 pKa = 3.44YY51 pKa = 10.62FYY53 pKa = 11.16NISQDD58 pKa = 3.51NEE60 pKa = 4.29SAGVFQYY67 pKa = 7.25EE68 pKa = 4.91TKK70 pKa = 10.2WSPNTQAVKK79 pKa = 10.46QIAEE83 pKa = 4.12HH84 pKa = 6.12FNVNFTQDD92 pKa = 3.74YY93 pKa = 10.32EE94 pKa = 4.3EE95 pKa = 5.16LGCLVYY101 pKa = 10.65GQAIFEE107 pKa = 4.81DD108 pKa = 5.66GILTDD113 pKa = 3.5TCLDD117 pKa = 3.59SKK119 pKa = 11.65DD120 pKa = 3.44FDD122 pKa = 3.89NYY124 pKa = 10.93EE125 pKa = 4.19LDD127 pKa = 3.94EE128 pKa = 4.51EE129 pKa = 4.6TDD131 pKa = 3.53TYY133 pKa = 11.19HH134 pKa = 7.45FEE136 pKa = 3.98GKK138 pKa = 10.18EE139 pKa = 3.82YY140 pKa = 10.67DD141 pKa = 4.05SEE143 pKa = 4.31WEE145 pKa = 3.82ILEE148 pKa = 4.18TLLEE152 pKa = 4.14RR153 pKa = 11.84KK154 pKa = 9.26IEE156 pKa = 4.11NQLNTTKK163 pKa = 10.34II164 pKa = 3.55

Molecular weight: 19.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A239XDR9|A0A239XDR9_9FLAO Uncharacterized protein OS=Chryseobacterium taklimakanense OX=536441 GN=SAMEA4412677_01452 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPSEE10 pKa = 3.58RR11 pKa = 11.84KK12 pKa = 9.37KK13 pKa = 10.2RR14 pKa = 11.84NKK16 pKa = 9.71HH17 pKa = 4.09GFRR20 pKa = 11.84EE21 pKa = 4.33RR22 pKa = 11.84MSTPNGRR29 pKa = 11.84RR30 pKa = 11.84VLAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.98GRR40 pKa = 11.84KK41 pKa = 8.79SLTVSASRR49 pKa = 11.84AKK51 pKa = 10.41RR52 pKa = 3.34

Molecular weight: 6.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2590

0

2590

816362

32

2350

315.2

35.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.527 ± 0.056

0.716 ± 0.017

5.442 ± 0.035

7.13 ± 0.058

5.427 ± 0.047

6.305 ± 0.04

1.757 ± 0.021

7.487 ± 0.045

8.392 ± 0.045

9.025 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.465 ± 0.022

6.035 ± 0.049

3.473 ± 0.024

3.552 ± 0.029

3.729 ± 0.031

6.162 ± 0.034

5.228 ± 0.034

6.133 ± 0.034

1.001 ± 0.018

4.012 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski