Amino acid dipepetide frequency for Botryotinia fuckeliana totivirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
12.484AlaAla: 12.484 ± 1.545
2.497AlaCys: 2.497 ± 0.091
4.994AlaAsp: 4.994 ± 1.183
3.745AlaGlu: 3.745 ± 1.137
0.624AlaPhe: 0.624 ± 0.477
6.866AlaGly: 6.866 ± 0.249
3.121AlaHis: 3.121 ± 0.614
4.37AlaIle: 4.37 ± 1.341
3.745AlaLys: 3.745 ± 0.864
9.988AlaLeu: 9.988 ± 0.365
1.248AlaMet: 1.248 ± 0.828
4.37AlaAsn: 4.37 ± 0.66
7.491AlaPro: 7.491 ± 2.274
0.624AlaGln: 0.624 ± 0.477
8.739AlaArg: 8.739 ± 1.319
10.612AlaSer: 10.612 ± 0.888
3.121AlaThr: 3.121 ± 0.614
7.491AlaVal: 7.491 ± 2.274
1.248AlaTrp: 1.248 ± 0.046
3.745AlaTyr: 3.745 ± 0.864
0.0AlaXaa: 0.0 ± 0.0
Cys
2.497CysAla: 2.497 ± 0.091
0.624CysCys: 0.624 ± 0.477
1.248CysAsp: 1.248 ± 0.955
0.0CysGlu: 0.0 ± 0.0
0.624CysPhe: 0.624 ± 0.477
0.624CysGly: 0.624 ± 0.523
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.624CysLys: 0.624 ± 0.477
0.624CysLeu: 0.624 ± 0.477
0.0CysMet: 0.0 ± 0.0
0.624CysAsn: 0.624 ± 0.523
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.624CysArg: 0.624 ± 0.477
1.873CysSer: 1.873 ± 0.432
0.624CysThr: 0.624 ± 0.523
1.248CysVal: 1.248 ± 0.046
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
5.618AspAla: 5.618 ± 0.705
1.248AspCys: 1.248 ± 0.046
3.745AspAsp: 3.745 ± 0.137
3.121AspGlu: 3.121 ± 1.387
1.248AspPhe: 1.248 ± 0.046
2.497AspGly: 2.497 ± 1.092
1.248AspHis: 1.248 ± 0.046
1.248AspIle: 1.248 ± 0.046
1.248AspLys: 1.248 ± 0.046
4.994AspLeu: 4.994 ± 0.818
1.248AspMet: 1.248 ± 0.955
2.497AspAsn: 2.497 ± 0.091
2.497AspPro: 2.497 ± 0.091
1.873AspGln: 1.873 ± 0.569
3.745AspArg: 3.745 ± 0.137
3.121AspSer: 3.121 ± 1.615
6.242AspThr: 6.242 ± 2.229
7.491AspVal: 7.491 ± 0.274
0.624AspTrp: 0.624 ± 0.477
1.248AspTyr: 1.248 ± 0.046
0.0AspXaa: 0.0 ± 0.0
Glu
7.491GluAla: 7.491 ± 2.728
0.0GluCys: 0.0 ± 0.0
2.497GluAsp: 2.497 ± 0.091
2.497GluGlu: 2.497 ± 0.909
0.624GluPhe: 0.624 ± 0.477
3.745GluGly: 3.745 ± 3.138
1.873GluHis: 1.873 ± 0.569
1.873GluIle: 1.873 ± 0.569
0.0GluLys: 0.0 ± 0.0
4.994GluLeu: 4.994 ± 0.182
1.248GluMet: 1.248 ± 0.046
0.624GluAsn: 0.624 ± 0.477
3.121GluPro: 3.121 ± 1.615
1.248GluGln: 1.248 ± 0.046
1.248GluArg: 1.248 ± 0.046
3.121GluSer: 3.121 ± 2.387
0.624GluThr: 0.624 ± 0.477
1.873GluVal: 1.873 ± 1.432
1.248GluTrp: 1.248 ± 0.955
1.248GluTyr: 1.248 ± 0.046
0.0GluXaa: 0.0 ± 0.0
Phe
3.745PheAla: 3.745 ± 1.137
0.0PheCys: 0.0 ± 0.0
1.873PheAsp: 1.873 ± 0.569
1.248PheGlu: 1.248 ± 0.046
0.624PhePhe: 0.624 ± 0.523
4.37PheGly: 4.37 ± 0.341
0.0PheHis: 0.0 ± 0.0
1.873PheIle: 1.873 ± 0.569
1.248PheLys: 1.248 ± 0.046
1.873PheLeu: 1.873 ± 0.569
0.0PheMet: 0.0 ± 0.0
2.497PheAsn: 2.497 ± 0.909
2.497PhePro: 2.497 ± 0.091
0.0PheGln: 0.0 ± 0.0
0.624PheArg: 0.624 ± 0.477
3.121PheSer: 3.121 ± 0.614
2.497PheThr: 2.497 ± 0.909
0.624PheVal: 0.624 ± 0.477
1.248PheTrp: 1.248 ± 1.046
0.624PheTyr: 0.624 ± 0.523
0.0PheXaa: 0.0 ± 0.0
Gly
6.866GlyAla: 6.866 ± 1.751
1.248GlyCys: 1.248 ± 0.046
3.121GlyAsp: 3.121 ± 0.614
4.994GlyGlu: 4.994 ± 1.183
1.873GlyPhe: 1.873 ± 0.569
8.739GlyGly: 8.739 ± 2.32
2.497GlyHis: 2.497 ± 1.092
5.618GlyIle: 5.618 ± 0.705
4.37GlyLys: 4.37 ± 0.66
9.363GlyLeu: 9.363 ± 3.843
0.624GlyMet: 0.624 ± 0.523
2.497GlyAsn: 2.497 ± 0.909
4.37GlyPro: 4.37 ± 2.66
0.624GlyGln: 0.624 ± 0.523
6.242GlyArg: 6.242 ± 0.772
9.363GlySer: 9.363 ± 2.159
4.994GlyThr: 4.994 ± 1.183
6.242GlyVal: 6.242 ± 1.228
0.0GlyTrp: 0.0 ± 0.0
3.745GlyTyr: 3.745 ± 0.864
0.0GlyXaa: 0.0 ± 0.0
His
4.37HisAla: 4.37 ± 0.66
0.0HisCys: 0.0 ± 0.0
0.624HisAsp: 0.624 ± 0.523
0.0HisGlu: 0.0 ± 0.0
0.0HisPhe: 0.0 ± 0.0
0.624HisGly: 0.624 ± 0.477
0.624HisHis: 0.624 ± 0.477
1.248HisIle: 1.248 ± 0.955
1.248HisLys: 1.248 ± 1.046
1.873HisLeu: 1.873 ± 0.569
0.624HisMet: 0.624 ± 0.523
1.248HisAsn: 1.248 ± 0.955
3.745HisPro: 3.745 ± 0.137
0.624HisGln: 0.624 ± 0.523
2.497HisArg: 2.497 ± 0.909
1.873HisSer: 1.873 ± 1.432
1.873HisThr: 1.873 ± 0.569
1.248HisVal: 1.248 ± 0.955
1.248HisTrp: 1.248 ± 1.046
0.624HisTyr: 0.624 ± 0.523
0.0HisXaa: 0.0 ± 0.0
Ile
6.242IleAla: 6.242 ± 0.228
0.0IleCys: 0.0 ± 0.0
2.497IleAsp: 2.497 ± 0.091
0.624IleGlu: 0.624 ± 0.477
3.745IlePhe: 3.745 ± 0.864
4.37IleGly: 4.37 ± 0.341
1.248IleHis: 1.248 ± 1.046
3.745IleIle: 3.745 ± 0.137
1.248IleLys: 1.248 ± 0.955
3.745IleLeu: 3.745 ± 1.864
1.248IleMet: 1.248 ± 0.283
3.121IleAsn: 3.121 ± 1.387
3.121IlePro: 3.121 ± 0.614
1.248IleGln: 1.248 ± 0.046
4.994IleArg: 4.994 ± 1.818
4.37IleSer: 4.37 ± 2.341
3.121IleThr: 3.121 ± 1.615
1.873IleVal: 1.873 ± 1.569
0.0IleTrp: 0.0 ± 0.0
0.624IleTyr: 0.624 ± 0.477
0.0IleXaa: 0.0 ± 0.0
Lys
1.248LysAla: 1.248 ± 0.955
0.624LysCys: 0.624 ± 0.477
1.873LysAsp: 1.873 ± 0.569
3.121LysGlu: 3.121 ± 1.387
1.248LysPhe: 1.248 ± 0.046
4.37LysGly: 4.37 ± 0.341
1.248LysHis: 1.248 ± 0.046
0.624LysIle: 0.624 ± 0.477
3.745LysLys: 3.745 ± 1.864
2.497LysLeu: 2.497 ± 0.909
1.248LysMet: 1.248 ± 0.955
0.0LysAsn: 0.0 ± 0.0
1.873LysPro: 1.873 ± 0.432
1.873LysGln: 1.873 ± 0.432
1.248LysArg: 1.248 ± 0.046
1.248LysSer: 1.248 ± 0.046
1.873LysThr: 1.873 ± 0.569
1.248LysVal: 1.248 ± 0.046
0.624LysTrp: 0.624 ± 0.477
1.248LysTyr: 1.248 ± 0.046
0.0LysXaa: 0.0 ± 0.0
Leu
9.988LeuAla: 9.988 ± 3.366
1.248LeuCys: 1.248 ± 0.046
7.491LeuAsp: 7.491 ± 0.274
4.994LeuGlu: 4.994 ± 1.818
2.497LeuPhe: 2.497 ± 0.091
11.86LeuGly: 11.86 ± 0.067
2.497LeuHis: 2.497 ± 0.909
3.121LeuIle: 3.121 ± 1.387
4.37LeuLys: 4.37 ± 1.341
11.86LeuLeu: 11.86 ± 4.069
1.248LeuMet: 1.248 ± 0.955
2.497LeuAsn: 2.497 ± 0.091
7.491LeuPro: 7.491 ± 0.274
1.873LeuGln: 1.873 ± 0.432
7.491LeuArg: 7.491 ± 0.727
8.115LeuSer: 8.115 ± 1.204
5.618LeuThr: 5.618 ± 0.295
4.994LeuVal: 4.994 ± 1.183
1.248LeuTrp: 1.248 ± 0.046
1.248LeuTyr: 1.248 ± 0.955
0.0LeuXaa: 0.0 ± 0.0
Met
1.873MetAla: 1.873 ± 0.569
0.0MetCys: 0.0 ± 0.0
0.624MetAsp: 0.624 ± 0.477
1.248MetGlu: 1.248 ± 0.955
0.624MetPhe: 0.624 ± 0.477
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
1.248MetIle: 1.248 ± 0.046
0.624MetLys: 0.624 ± 0.523
1.873MetLeu: 1.873 ± 1.432
0.0MetMet: 0.0 ± 0.0
1.248MetAsn: 1.248 ± 0.046
0.624MetPro: 0.624 ± 0.523
1.248MetGln: 1.248 ± 0.955
1.248MetArg: 1.248 ± 0.955
2.497MetSer: 2.497 ± 0.909
1.248MetThr: 1.248 ± 0.046
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.624MetTyr: 0.624 ± 0.477
0.0MetXaa: 0.0 ± 0.0
Asn
7.491AsnAla: 7.491 ± 1.727
0.0AsnCys: 0.0 ± 0.0
1.873AsnAsp: 1.873 ± 1.432
1.873AsnGlu: 1.873 ± 0.569
1.873AsnPhe: 1.873 ± 0.432
2.497AsnGly: 2.497 ± 1.092
1.873AsnHis: 1.873 ± 0.569
1.873AsnIle: 1.873 ± 0.432
0.624AsnLys: 0.624 ± 0.477
4.37AsnLeu: 4.37 ± 0.341
0.624AsnMet: 0.624 ± 0.523
0.624AsnAsn: 0.624 ± 0.523
3.121AsnPro: 3.121 ± 0.386
0.0AsnGln: 0.0 ± 0.0
2.497AsnArg: 2.497 ± 0.909
6.242AsnSer: 6.242 ± 2.773
2.497AsnThr: 2.497 ± 1.092
0.0AsnVal: 0.0 ± 0.0
0.624AsnTrp: 0.624 ± 0.477
0.0AsnTyr: 0.0 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
4.994ProAla: 4.994 ± 3.183
0.624ProCys: 0.624 ± 0.523
3.745ProAsp: 3.745 ± 0.137
1.873ProGlu: 1.873 ± 1.432
3.121ProPhe: 3.121 ± 1.615
8.115ProGly: 8.115 ± 1.797
1.248ProHis: 1.248 ± 0.955
3.745ProIle: 3.745 ± 0.137
0.624ProLys: 0.624 ± 0.477
6.242ProLeu: 6.242 ± 0.772
1.873ProMet: 1.873 ± 0.432
1.873ProAsn: 1.873 ± 1.569
6.866ProPro: 6.866 ± 1.751
2.497ProGln: 2.497 ± 1.092
2.497ProArg: 2.497 ± 1.092
0.624ProSer: 0.624 ± 0.523
6.242ProThr: 6.242 ± 3.229
1.248ProVal: 1.248 ± 0.046
0.624ProTrp: 0.624 ± 0.523
1.873ProTyr: 1.873 ± 0.432
0.0ProXaa: 0.0 ± 0.0
Gln
1.873GlnAla: 1.873 ± 0.432
0.0GlnCys: 0.0 ± 0.0
0.624GlnAsp: 0.624 ± 0.523
0.624GlnGlu: 0.624 ± 0.477
0.0GlnPhe: 0.0 ± 0.0
3.745GlnGly: 3.745 ± 0.137
0.624GlnHis: 0.624 ± 0.523
0.0GlnIle: 0.0 ± 0.0
0.624GlnLys: 0.624 ± 0.477
1.248GlnLeu: 1.248 ± 1.046
0.0GlnMet: 0.0 ± 0.0
0.624GlnAsn: 0.624 ± 0.523
1.873GlnPro: 1.873 ± 0.569
0.0GlnGln: 0.0 ± 0.0
0.624GlnArg: 0.624 ± 0.477
4.37GlnSer: 4.37 ± 0.341
1.873GlnThr: 1.873 ± 0.569
2.497GlnVal: 2.497 ± 0.091
0.624GlnTrp: 0.624 ± 0.477
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
7.491ArgAla: 7.491 ± 1.274
1.248ArgCys: 1.248 ± 0.046
2.497ArgAsp: 2.497 ± 0.091
2.497ArgGlu: 2.497 ± 0.091
2.497ArgPhe: 2.497 ± 1.092
8.739ArgGly: 8.739 ± 0.681
3.121ArgHis: 3.121 ± 0.614
2.497ArgIle: 2.497 ± 0.091
0.624ArgLys: 0.624 ± 0.477
6.242ArgLeu: 6.242 ± 0.772
2.497ArgMet: 2.497 ± 1.91
2.497ArgAsn: 2.497 ± 1.91
2.497ArgPro: 2.497 ± 0.091
2.497ArgGln: 2.497 ± 2.092
4.37ArgArg: 4.37 ± 2.341
3.745ArgSer: 3.745 ± 1.864
4.994ArgThr: 4.994 ± 0.818
4.994ArgVal: 4.994 ± 0.182
1.248ArgTrp: 1.248 ± 0.046
2.497ArgTyr: 2.497 ± 0.091
0.0ArgXaa: 0.0 ± 0.0
Ser
6.866SerAla: 6.866 ± 0.249
0.624SerCys: 0.624 ± 0.477
6.242SerAsp: 6.242 ± 0.772
3.121SerGlu: 3.121 ± 0.386
3.745SerPhe: 3.745 ± 0.864
5.618SerGly: 5.618 ± 1.706
1.873SerHis: 1.873 ± 0.432
4.37SerIle: 4.37 ± 0.341
1.873SerLys: 1.873 ± 0.432
12.484SerLeu: 12.484 ± 2.545
1.248SerMet: 1.248 ± 0.955
3.121SerAsn: 3.121 ± 1.387
3.121SerPro: 3.121 ± 1.615
2.497SerGln: 2.497 ± 1.092
5.618SerArg: 5.618 ± 2.296
5.618SerSer: 5.618 ± 0.295
6.242SerThr: 6.242 ± 0.772
6.866SerVal: 6.866 ± 0.249
1.248SerTrp: 1.248 ± 0.955
3.745SerTyr: 3.745 ± 1.864
0.0SerXaa: 0.0 ± 0.0
Thr
3.745ThrAla: 3.745 ± 3.138
0.0ThrCys: 0.0 ± 0.0
3.121ThrAsp: 3.121 ± 1.615
0.0ThrGlu: 0.0 ± 0.0
1.248ThrPhe: 1.248 ± 1.046
3.121ThrGly: 3.121 ± 2.615
0.624ThrHis: 0.624 ± 0.477
5.618ThrIle: 5.618 ± 0.705
3.121ThrLys: 3.121 ± 0.386
8.115ThrLeu: 8.115 ± 2.205
1.248ThrMet: 1.248 ± 0.955
6.242ThrAsn: 6.242 ± 0.772
2.497ThrPro: 2.497 ± 1.092
1.248ThrGln: 1.248 ± 0.955
6.866ThrArg: 6.866 ± 3.752
6.866ThrSer: 6.866 ± 0.751
6.866ThrThr: 6.866 ± 0.751
1.248ThrVal: 1.248 ± 0.046
0.624ThrTrp: 0.624 ± 0.523
2.497ThrTyr: 2.497 ± 0.091
0.0ThrXaa: 0.0 ± 0.0
Val
3.745ValAla: 3.745 ± 0.864
0.624ValCys: 0.624 ± 0.477
4.994ValAsp: 4.994 ± 1.183
3.745ValGlu: 3.745 ± 2.138
1.873ValPhe: 1.873 ± 0.569
4.994ValGly: 4.994 ± 3.183
0.624ValHis: 0.624 ± 0.477
3.745ValIle: 3.745 ± 1.864
1.248ValLys: 1.248 ± 0.955
5.618ValLeu: 5.618 ± 1.706
0.0ValMet: 0.0 ± 0.0
3.745ValAsn: 3.745 ± 0.137
1.248ValPro: 1.248 ± 0.046
1.873ValGln: 1.873 ± 1.432
5.618ValArg: 5.618 ± 0.705
6.242ValSer: 6.242 ± 1.228
2.497ValThr: 2.497 ± 0.091
4.37ValVal: 4.37 ± 2.66
0.0ValTrp: 0.0 ± 0.0
1.248ValTyr: 1.248 ± 0.046
0.0ValXaa: 0.0 ± 0.0
Trp
0.624TrpAla: 0.624 ± 0.477
0.624TrpCys: 0.624 ± 0.477
1.248TrpAsp: 1.248 ± 0.046
0.624TrpGlu: 0.624 ± 0.523
1.873TrpPhe: 1.873 ± 1.569
0.624TrpGly: 0.624 ± 0.477
0.0TrpHis: 0.0 ± 0.0
1.248TrpIle: 1.248 ± 0.046
0.624TrpLys: 0.624 ± 0.477
1.248TrpLeu: 1.248 ± 0.046
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.624TrpArg: 0.624 ± 0.477
1.873TrpSer: 1.873 ± 0.432
0.0TrpThr: 0.0 ± 0.0
0.624TrpVal: 0.624 ± 0.523
0.624TrpTrp: 0.624 ± 0.477
0.624TrpTyr: 0.624 ± 0.477
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.497TyrAla: 2.497 ± 0.909
0.624TyrCys: 0.624 ± 0.477
1.873TyrAsp: 1.873 ± 0.432
1.248TyrGlu: 1.248 ± 0.046
0.624TyrPhe: 0.624 ± 0.477
1.873TyrGly: 1.873 ± 0.432
1.873TyrHis: 1.873 ± 1.432
3.121TyrIle: 3.121 ± 1.387
1.248TyrLys: 1.248 ± 0.046
2.497TyrLeu: 2.497 ± 0.909
0.0TyrMet: 0.0 ± 0.0
0.624TyrAsn: 0.624 ± 0.477
2.497TyrPro: 2.497 ± 0.091
0.0TyrGln: 0.0 ± 0.0
1.873TyrArg: 1.873 ± 0.569
1.248TyrSer: 1.248 ± 0.046
1.873TyrThr: 1.873 ± 0.569
1.873TyrVal: 1.873 ± 0.569
0.0TyrTrp: 0.0 ± 0.0
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1603 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski